Factsheet for HORVU3Hr1G024610.13

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G130200.4	Wheat	cytosol	88.68	96.46
TraesCS3B01G149300.8	Wheat	cytosol	88.54	96.31
TraesCS3D01G131100.11	Wheat	cytosol	88.12	95.41
Zm00001d008725_P003	Maize	cytosol	68.88	70.27
Zm00001d039673_P002	Maize	cytosol	69.02	69.61
OQU86230	Sorghum	cytosol	69.87	69.09
Os01t0172200-01	Rice	cytosol	72.7	67.72
Bra040699.1-P	Field mustard	cytosol	52.62	61.08
AT3G01540.2	Thale cress	cytosol	53.18	60.74
Bra001004.1-P	Field mustard	cytosol	53.89	59.91
Solyc12g035130.1.1	Tomato	nucleus	51.77	59.8
PGSC0003DMT400080614	Potato	nucleus	51.34	59.22
CDX91943	Canola	cytosol	52.9	56.24
CDY28671	Canola	cytosol	52.48	55.96
Bra023478.1-P	Field mustard	cytosol	53.32	55.77
Solyc02g086660.2.1	Tomato	nucleus	55.02	55.1
CDX91036	Canola	cytosol	53.18	54.97
CDX74304	Canola	cytosol	52.9	54.36
AT5G14610.1	Thale cress	cytosol	53.75	53.37
PGSC0003DMT400001391	Potato	cytosol	54.88	53.15
KRG93254	Soybean	endoplasmic reticulum	55.59	50.64
KRH56577	Soybean	nucleus	55.45	50.58
CDX85591	Canola	cytosol	53.32	50.13
VIT_14s0066g01020.t01	Wine grape	cytosol	55.45	45.42
HORVU3Hr1G092600.1	Barley	cytosol	35.22	43.38
HORVU3Hr1G092610.1	Barley	cytosol	35.22	43.38
HORVU3Hr1G018850.7	Barley	cytosol	33.24	42.96
HORVU1Hr1G083090.1	Barley	cytosol	13.72	38.65
HORVU3Hr1G031710.1	Barley	mitochondrion	12.59	34.1
HORVU5Hr1G037290.3	Barley	nucleus	25.18	33.58
HORVU7Hr1G084210.1	Barley	cytosol	28.15	32.62
HORVU4Hr1G031280.1	Barley	cytosol, plastid	27.58	32.45
HORVU5Hr1G109340.2	Barley	plastid	27.02	28.85
HORVU5Hr1G048040.1	Barley	plastid	22.63	27.97
HORVU1Hr1G091050.3	Barley	nucleus	23.34	27.59
HORVU3Hr1G022710.1	Barley	mitochondrion	23.9	26.49
HORVU3Hr1G018170.3	Barley	cytosol	50.64	25.9
HORVU4Hr1G053550.2	Barley	mitochondrion	26.45	23.55
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	12.59	23.42
HORVU4Hr1G007110.17	Barley	mitochondrion	24.33	22.34
HORVU6Hr1G080730.2	Barley	cytosol	9.9	21.41
HORVU2Hr1G025790.1	Barley	nucleus	26.59	18.45
HORVU0Hr1G020490.1	Barley	nucleus	27.72	18.39

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287KGA1	EMBL:AK369041	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU3Hr1G024610	EnsemblPlants:HORVU3Hr1G024610.13	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487
SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI000B4837E4	InterPro:WW_dom	InterPro:WW_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:95702998..95709894

Molecular Weight (calculated)

76349.8 Da

IEP (calculated)

10.082

GRAVY (calculated)

-0.583

Length

707 amino acids

Sequence
(BLAST)

001: PRIDEEGKGS HTHPQQRATR SHSATPRAPS PTPSSVRRAA ASTPLAPAPP IARGLGGGMA SAAPRYAPED PTLPKPWRGL IDGTTGYLYF WNPETKAVTY
101: DRPTGPPPPV APAPAPAPAP APVQQPQYHH DERARHRDPP ERHTESAGNR MQNAPFADHK ARNDPSFEQR PSAGVNPAPM PSTNPAPQAA NGNMSVDAYR
201: KKHEITIICP GREAPPPFMS FQSTGFPSEI LREVQQAGFS APSPIQAQSW PIALKGSDIV AVAKTGSGKT LGYLLPGFIL VKNLRHNSRD GPTVLVLSPT
301: RELATQIQDE AIKFGRSSRI SSTCLYGGAP KGPQLRDLER GADIVVATPG RLNDILEMGK VSLRQVAYLV LDEADRMLDM GFEPQIRKIV KQVQPKRQTL
401: MFTATWPREV RKIASDLLTN PVQVNIGNTD ELVANKSITQ YVEVTTSMEK GRRLDQILRQ QEPGSKVIIF CSTKRMCDQL SRNLSRQYGA SAIHGDKSQA
501: ERDSVLSEFR TGRCPILVAT DVAARGLDVK DIRVVVNYDF PTGVEDYVHR IGRTGRAGAS GIAYTFFCDQ DSKYASDLVK ILEGANQAVS PELRAMVGRG
601: GYGGRGPRRW ASSNDSYGGH GAYGSQTRDG PSFQSSFNNS SSGNQYGGAP SFTSSNNNQT SVAANLPVSG SSGEGLSFHA RFYSSSSRGG DRARSRSPPK
701: AVGVSNW

Best Arabidopsis Sequence Match ( AT5G14610.2 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.