Factsheet for PGSC0003DMT400046821

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112350.2.1	Tomato	nucleus	87.47	96.47
GSMUA_Achr8P01340_001	Banana	cytosol	43.31	81.2
KRH03228	Soybean	nucleus	62.81	74.92
KRH57127	Soybean	endoplasmic reticulum, nucleus	63.51	74.51
Bra035857.1-P	Field mustard	cytosol	58.36	70.9
CDY16735	Canola	cytosol	58.36	70.9
AT5G63120.2	Thale cress	cytosol	58.36	70.9
CDY48128	Canola	cytosol	58.5	70.71
TraesCS3B01G451900.1	Wheat	cytosol	56.13	70.21
TraesCS3D01G412400.2	Wheat	cytosol	56.13	70.09
TraesCS3A01G416900.1	Wheat	cytosol	55.99	70.03
EES04084	Sorghum	cytosol	56.27	69.9
HORVU3Hr1G092600.1	Barley	cytosol	55.71	69.69
HORVU3Hr1G092610.1	Barley	cytosol	55.71	69.69
PGSC0003DMT400083878	Potato	cytosol	48.33	69.26
Zm00001d042416_P002	Maize	extracellular, plasma membrane	56.13	63.17
VIT_17s0000g09130.t01	Wine grape	cytosol	53.2	62.52
PGSC0003DMT400080614	Potato	nucleus	32.31	37.85
PGSC0003DMT400024026	Potato	nucleus	26.6	34.29
PGSC0003DMT400001391	Potato	cytosol	33.84	33.29
PGSC0003DMT400081851	Potato	cytosol	26.88	31.95
PGSC0003DMT400010921	Potato	cytosol	26.74	31.89
PGSC0003DMT400002828	Potato	cytosol	27.02	31.39
PGSC0003DMT400036663	Potato	cytosol	23.54	28.69
PGSC0003DMT400023277	Potato	cytosol	30.64	28.42
PGSC0003DMT400073340	Potato	cytosol	23.26	28.35
PGSC0003DMT400024330	Potato	cytosol	24.65	26.46
PGSC0003DMT400043101	Potato	nucleus	25.07	25.46
PGSC0003DMT400071932	Potato	cytosol	3.2	20.72
PGSC0003DMT400011665	Potato	nucleus	29.11	18.74

Protein Annotations

EntrezGene:102578396	MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M1BJP5	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400018181
PGSC:PGSC0003DMG400018181	EnsemblPlants:PGSC0003DMT400046821	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00029482F7	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 30 [Source:PGSC_GENE;Acc:PGSC0003DMG400018181]

Coordinates

chr3:+:52133272..52141809

Molecular Weight (calculated)

77650.3 Da

IEP (calculated)

9.754

GRAVY (calculated)

-0.425

Length

718 amino acids

Sequence
(BLAST)

001: MSYPNYDSRY GDSGSYRQRR SDLMGPQPSM YPRPMSDGGA ASYGRGGPLP YGGPQAGGPP PMDGGSRGGM GGSGRVGGGY PPFEGGFPRG SDIGRFGGGG
101: VDRVANGGMG ERPGRFGAGA SYSGGRSGGG RGGRGFDGGY SGGRGGGRFS SDGGRGSSGG RGGRHGRSRD DLDNLTLPKQ DFGNLVPFEK NFYVENHAVR
201: AMTDQEVAHY RARRDITIEG QDVPRPIQMF HEANFPDYCL EVISRLGFVE PTPIQSQGWP MALKGRDLIG IAETGSGKTL AYLLPALVHV SAQPRLAQGD
301: GPIVLVLAPT RELAVQIQEE AVKFGSRANI RSTCIYGGAP KGPQIRDLRR GVEIVIATPG RLIDMLEAQH TNLKRVTYLV LDEADRMLDM GWMSALSGTV
401: SDSSVWIRPD RQTLYWSATW PKEVESLARQ FLRNPYKVII GSPELKANQS IRQVIEVVTD LEKYSRLIGL LKEVMDGSRI LIFVETKKGC DQVTRQLRMD
501: GWPALSIHGD KSQDERDWVL ADFKTGRSPI MIATDVAARG LDIVSVDESN LLIRFKAEID SDPFERSGRL MQDYCVTGID FASSGGAAPY PCQVKLGVTR
601: VLFSFVADVK DIKCVINYDF PSSLEDYIHR IGRTGRAGAT GTAYTFFTHA NAKFTRELIK ILQQAGQIVP PQLSALARSS GHSTGGSNFR SRGRGGFGNR
701: GQRSGSNVIP IGGSRRPW

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.