CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51212	Soybean	nucleus	96.6	97.29
VIT_03s0038g00010.t01	Wine grape	cytosol	86.69	85.96
GSMUA_Achr3P01410_001	Banana	nucleus	64.02	85.77
VIT_09s0054g01810.t01	Wine grape	cytosol	85.84	85.47
PGSC0003DMT400043101	Potato	nucleus	83.43	83.31
CDX84672	Canola	cytosol	52.41	82.77
Solyc02g081290.2.1	Tomato	nucleus	76.2	82.39
CDY53786	Canola	nucleus	68.7	82.2
Bra021872.1-P	Field mustard	nucleus	76.06	81.49
AT2G33730.1	Thale cress	nucleus	82.44	79.4
CDY37696	Canola	nucleus	65.58	78.47
PGSC0003DMT400024330	Potato	cytosol	73.37	77.43
Solyc02g068190.1.1	Tomato	cytosol, nucleus	71.95	76.74
TraesCS4A01G270200.1	Wheat	nucleus	78.61	76.34
TraesCS4B01G043900.1	Wheat	nucleus	78.61	76.13
Zm00001d033704_P007	Maize	extracellular	79.46	76.02
CDX79541	Canola	nucleus	67.56	75.83
Zm00001d013453_P001	Maize	nucleus	78.47	75.48
Os03t0708600-02	Rice	nucleus	77.62	74.46
HORVU4Hr1G007110.17	Barley	mitochondrion	78.9	72.34
HORVU6Hr1G080730.2	Barley	cytosol	33.43	72.17
KXG37746	Sorghum	nucleus	79.75	69.68
TraesCS4D01G041400.1	Wheat	nucleus	78.75	69.41
TraesCS6B01G364400.1	Wheat	nucleus, plastid	63.46	69.03
TraesCS6B01G364300.1	Wheat	nucleus, plastid	63.31	68.88
TraesCS5B01G079300.1	Wheat	nucleus	70.11	68.85
TraesCS1B01G445500.1	Wheat	cytosol	43.77	67.61
HORVU3Hr1G031710.1	Barley	mitochondrion	24.5	66.28
HORVU1Hr1G083090.1	Barley	cytosol	23.23	65.34
TraesCS1A01G415500.1	Wheat	cytosol	59.49	65.22
HORVU1Hr1G091050.3	Barley	nucleus	53.82	63.55
OQU83862	Sorghum	nucleus	57.51	63.24
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	29.46	54.74
KRH47127	Soybean	nucleus	25.21	35.11
KRH44155	Soybean	cytosol	25.07	34.91
KRH48684	Soybean	cytosol, endoplasmic reticulum	22.66	33.61
KRH74291	Soybean	nucleus	24.22	31.84
KRG97325	Soybean	endoplasmic reticulum	26.63	31.81
KRH39630	Soybean	nucleus	24.08	31.66
KRH42811	Soybean	endoplasmic reticulum	27.48	31.34
KRH58901	Soybean	nucleus	27.2	31.27
KRH30661	Soybean	endoplasmic reticulum	24.93	31.15
KRG98124	Soybean	endoplasmic reticulum	25.07	31.0
KRH38030	Soybean	endoplasmic reticulum	26.77	30.93
KRH71800	Soybean	plastid	26.63	30.77
KRH31589	Soybean	nucleus	26.2	30.63
KRG94409	Soybean	cytosol	25.21	30.27
KRH68534	Soybean	cytosol	25.07	30.15
KRH20283	Soybean	plastid	24.5	29.52
KRH57127	Soybean	endoplasmic reticulum, nucleus	25.5	29.41
KRH03228	Soybean	nucleus	25.07	29.4
KRH03709	Soybean	plastid	24.08	27.87
KRG96540	Soybean	cytosol, mitochondrion	27.34	25.13
KRH68277	Soybean	nucleus	27.62	24.94
KRH56577	Soybean	nucleus	27.05	24.65
KRG93254	Soybean	endoplasmic reticulum	26.63	24.23
KRH27757	Soybean	nucleus	31.02	19.78
KRH77709	Soybean	nucleus	30.45	19.47
KRH36905	Soybean	nucleus	24.22	14.68
KRH11875	Soybean	endoplasmic reticulum	24.65	14.49

Protein Annotations

EntrezGene:100792810	MapMan:16.4.7.1.3	Gene3D:3.40.50.300	EMBL:ACUP02010293	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_17G004800	GO:GO:0000166	GO:GO:0000375	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005682	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0071013
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1MQW6	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlants:KRH01937	ProteinID:KRH01937	ProteinID:KRH01937.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233E261
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:468645..471614

Molecular Weight (calculated)

81759.9 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.962

Length

706 amino acids

Sequence
(BLAST)

001: MKRSNDDVAA PVPASTSKPV FLTKAQREQL ALQRRQEEVA DQKRRQEQLL SRNHSSDPKP SSDRDRDRER DRDHHRDRDR DRDRDRERER ERARDRDREA
101: ERRNRERERE EESRARERAR LEKLAERERE KELESIKEQY LGSKKPKKRV IKPSEKFRFS FDWENTEDTS RDMNSLYQNP HEAQLLFGRG FRAGMDRREQ
201: KKLAAKNEKD MRDQIRKKDG LEERPEEADA QRRKEAAADL YDTFDMRVDR HWSEKKLEEM TERDWRIFRE DYNISYKGSK IPRPMRSWNE SKLTNELLKA
301: VEKAGYKTPS PIQMAAIPLG LQQRDVIGIA ETGSGKTAAF VLPMLSYITR LPPISEDNEA EGPYAVVMAP TRELAQQIED ETVKFAQYLG IKVVSIVGGQ
401: SIEEQGFKIR QGCEIVIATP GRLIDCLERR YAVLNQCNYV VLDEADRMID MGFEPQVMGV LDAMPSSNLK PENEDEELDE KKIYRTTYMF SATMPPAVER
501: LARKYLRNPV VVTIGTAGKA TDLISQHVIM MKEAEKFSKL HRLLDELNDK TAIVFVNTKK NADHVAKNLD KDGYRVTTLH GGKSQEQREI SLEGFRTKRY
601: NVLVATDVAG RGIDIPDVAH VINYDMPGNI EMYTHRIGRT GRAGKTGVAT TFLTLHDSDV FYDLKQMLIQ SNSPVPPELA RHEASKFKPG TIPDRPPRRN
701: DTVFAH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.