Factsheet for TraesCS5B01G079300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84672	Canola	cytosol	45.76	73.6
TraesCS4B01G043900.1	Wheat	nucleus	74.27	73.25
GSMUA_Achr3P01410_001	Banana	nucleus	53.69	73.24
TraesCS1B01G445500.1	Wheat	cytosol	45.2	71.12
KRH51212	Soybean	nucleus	68.43	70.19
KRH01937	Soybean	nucleus	68.85	70.11
VIT_09s0054g01810.t01	Wine grape	cytosol	68.01	68.97
VIT_03s0038g00010.t01	Wine grape	cytosol	68.15	68.82
CDY53786	Canola	nucleus	56.47	68.81
PGSC0003DMT400043101	Potato	nucleus	67.45	68.6
Bra021872.1-P	Field mustard	nucleus	62.31	67.98
Solyc02g081290.2.1	Tomato	nucleus	61.2	67.38
CDY37696	Canola	nucleus	54.8	66.78
Solyc02g068190.1.1	Tomato	cytosol, nucleus	61.47	66.77
CDX79541	Canola	nucleus	58.14	66.45
AT2G33730.1	Thale cress	nucleus	67.73	66.44
TraesCS6B01G364400.1	Wheat	nucleus, plastid	59.94	66.41
TraesCS6B01G364300.1	Wheat	nucleus, plastid	59.81	66.26
PGSC0003DMT400024330	Potato	cytosol	60.78	65.32
TraesCS3B01G121100.1	Wheat	cytosol	25.17	37.09
TraesCS3B01G451900.1	Wheat	cytosol	24.76	31.01
TraesCS4B01G126000.1	Wheat	cytosol, plastid	25.59	30.62
TraesCS5B01G120500.1	Wheat	nucleus	22.39	30.32
TraesCS5B01G464500.2	Wheat	cytosol	25.73	29.18
TraesCS3B01G141300.1	Wheat	cytosol	23.78	27.85
TraesCS5B01G152200.1	Wheat	cytosol	23.37	27.59
TraesCS3B01G149300.8	Wheat	cytosol	24.34	26.92
TraesCS4B01G181800.1	Wheat	nucleus	26.29	24.67
TraesCS3B01G208800.1	Wheat	cytosol	19.33	22.53
TraesCS3B01G230800.1	Wheat	nucleus	23.64	21.66
TraesCS3B01G193400.3	Wheat	cytosol	19.61	21.08
TraesCS2B01G170700.1	Wheat	nucleus	27.96	19.76
TraesCS7B01G187000.1	Wheat	nucleus	28.65	19.38
TraesCS3B01G117000.1	Wheat	cytosol	25.03	13.36

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5B01G079300	EnsemblPlants:TraesCS5B01G079300.1
TIGR:cd00079	TIGR:cd00268	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:-:96755911..96758070

Molecular Weight (calculated)

81942.7 Da

IEP (calculated)

9.329

GRAVY (calculated)

-0.745

Length

719 amino acids

Sequence
(BLAST)

001: MKRSASWLET AKPVFVTKAE RERRQAPAVA DRRHSAADLF RSLHQPPLLP SPTPPSSFNP SLCNSAYRDS SDRDRDRDRR HDLDRDRRRD RYDSSCRDRG
101: KERIRERGPG RDCHREREQD RDGERADRNR EKDRLERMAE REREKELEAI KEQYLGCKKP KKQVIKPSEK FRSFDWENTE DTSRDMNTLY QLPHEARPLF
201: GRGFVAGMDR REQKKAAAQH EKKIRAELRH RTGAEDRMED DDDLVGKKNA AAADSYDTFD MRVDRHWSEK SLAEMTERDW RIFREDFSIS YKGSRVPRPM
301: RSWSESNLGA ELLLAVEGAG YRKPSPIQMA AIPLGLSQRD VIGIAETGSG KTAAFVLPMM SYIAQLPPIS DENGPYALVL APTRELAQQI EEETVKFANC
401: LGIRVVSVVG GQQIEGQALK LKQGCEIVIA TPGRLLDCLE SRYAVLNQCN YVVLDEADRM IDMGFEPQVV AVLDAMPSSN LKPENEDEKL DERRIYRTTC
501: MFSATMPPAV ERLARKYLRH PVVVTIGTPG KATELITQNV MMVKESEKKF LLHKMLRELG DKTAIVFCNT RESVGMHTKD LANKGFRVMG IHGGKSQAKR
601: DISLDGFRNR HCNVLVATDI LARGIDVPDV AHVINYEMHN SIEIYTHRIG RTGRAGKKGV ATSFLTLENT DIFFDLKQML IQSNSPVPPE LARHEASRFR
701: PGSAPGRPPR RNDTVFANR

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.