Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048632_P001 | Maize | cytosol | 92.07 | 92.47 |
| Zm00001d007719_P010 | Maize | cytosol | 88.33 | 90.61 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 71.04 | 74.47 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 71.33 | 74.21 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 71.04 | 73.2 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 71.18 | 71.49 |
| OQU86230 | Sorghum | cytosol | 27.38 | 53.15 |
| CDX74101 | Canola | cytosol | 33.0 | 52.28 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 43.3 | 52.12 |
| CDY08048 | Canola | nucleus | 32.93 | 51.93 |
| KXG32714 | Sorghum | nucleus | 29.32 | 51.45 |
| KRH36905 | Soybean | nucleus | 43.16 | 51.42 |
| KRH11875 | Soybean | endoplasmic reticulum | 43.8 | 50.62 |
| Bra001200.1-P | Field mustard | cytosol | 38.18 | 50.38 |
| AT3G06480.1 | Thale cress | cytosol | 39.19 | 50.0 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 38.04 | 50.0 |
| KXG31614 | Sorghum | cytosol | 17.07 | 48.17 |
| Solyc01g057760.2.1 | Tomato | nucleus | 41.5 | 47.17 |
| EES04084 | Sorghum | cytosol | 18.66 | 44.81 |
| OQU76674 | Sorghum | cytosol | 15.2 | 37.21 |
| EER96257 | Sorghum | cytosol | 13.54 | 36.72 |
| KXG37329 | Sorghum | cytosol, plastid | 16.21 | 35.43 |
| KXG34634 | Sorghum | plastid | 16.35 | 35.14 |
| KXG28851 | Sorghum | cytosol, plastid | 15.78 | 35.04 |
| EER92293 | Sorghum | cytosol | 12.9 | 28.96 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 15.2 | 27.55 |
| OQU83862 | Sorghum | nucleus | 11.89 | 25.7 |
| KXG37746 | Sorghum | nucleus | 12.97 | 22.28 |
| OQU79814 | Sorghum | nucleus | 14.84 | 20.87 |
| EES14596 | Sorghum | nucleus | 14.55 | 19.02 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:C5Y829 | InterPro:DEAD/DEAH_box_helicase_dom | ProteinID:EES10273.2 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004620 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0016020 | GO:GO:0016787 | GO:GO:0047372 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:OQU84042 | ProteinID:OQU84042 | ProteinID:OQU84042.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 | EnsemblPlantsGene:SORBI_3005G220000 | SUPFAM:SSF51045 |
| SUPFAM:SSF52540 | unigene:Sbi.9263 | UniParc:UPI00081ABCD0 | InterPro:WW_dom | InterPro:WW_dom_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:+:70662496..70669344
Molecular Weight (calculated)
147651.0 Da
IEP (calculated)
10.048
GRAVY (calculated)
-0.799
Length
1388 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAQEATAAA DSSGPRFAPD DPTLPAPWKA LIDGATLYYW NPETNVTQYE KPAAATAGVP PMPAGPPPPT PAQGPEPAPG VYSQPNIGQA GQAGHQYPQA
0101: GQAAYPQAGQ LGQQHTQQPA QQHVPAQHQA SFQQVPYQQQ QAYMPNQPHQ YHSAHPQHMP YQHGPYMQPQ QQQQAPPYSY QADQQPQMPQ TAYNQAQQSP
0201: MPQAAYNQGQ SQQPPMPQAA YNQGQVQQPP MPQPSYNQGQ VQQPPMPQPS YNQGQQSMIP QSAYNQPQQP QMPHGAYNQG QQPQGVRIPQ SQGQHPQQSL
0301: SFHHPAQATQ SPQVSQPQGL KMPSQQGQLQ HGLPFTQHGK PPLSHGQQSP LLKDDDGVYE GKRTGFSLPL SQQRGQAPLP NQQLPSSHQN PGALSSQPNI
0401: PGVGGPLYPA KHLPGGSSSA ETNNMGFMNS PAHMHQGGAD TNYQQKPVSG HAVPNHAGPS PIRPPMGFDM GNSDGHFERD DSHSYGRFDG TKALQQQPKL
0501: APIPTSQNPM GMHNGPPYPR PDNFGGYNMA PPHSVPNPHN LGPLPIGTSV RPPSSMFAPP DFPSVSSADA YRQHHEVTAM GENVPAPFMT FEATGFPPEI
0601: LREIHAAGFS NPTPIQAQTW PVALQNRDIV AIAKTGSGKT LGYLIPAFIH LRRCHNNPML GPTVLVLAPT RELASQIQDE VVKFGQSSRV SCTCLYGGAS
0701: KGPQLRELER GADIVVATPG RLNDILEMKK ISLHQVSLLV LDEADRMLDM GFEPQIRKIV DEIPNTRQTL MYTATWPKEV TKIAGDLLRD PVQVNIGSID
0801: ELVANKSITQ YVEVVPPMDK QRRLEQILRD QERGSKIIIF CSTKKMCDQL ARGIGRNFNA VSIHGDKSQA ERDNVLNQFR TGRAPILVAT DVAARGLDIK
0901: DIRVVINYDF PTGIEDYVHR IGRTGRAGAT GVSYTFFSEQ DWKYAGDLVK LLQGANQHVP PQLQDMAARS ASGGPRNQAA GMSRWDGPGG RRFDPGAGGP
1001: VGYGGVREGP GGFSGREGPG GFGVRESPAM FGGREGPDGL GGRAGPGGFG SREGPGGFGG HEGPGGFGGR EGPGGFGGRK GPGGFGGRDG PGSGGFGGRG
1101: ERGSGGFGSR GGASPGGFGG RGGRGDSPGF GGRGRGDFSS FGGRGRGDSP GFGGRGRGDF SGGRGGRGRG FGGRGRSDRG PHDRFVSDGR GRYDNRRGFG
1201: DKGRDRSYSR SPDRGRSRGY DRRSDSRSIS RSRSRSRSWS RSRSRSRSWS RSRSRSSSRS RSRSRSRDHG AAPERRPRAR SGFDVLPPAT GAAGPAPVPV
1301: PVPGPAGPPV PALAPQQSLA DTSSMSPMSP GVLVQAPAAA PLICGGNDNS FGATPTGQPF QGTDGAFPSF PAGETFPGAA VQQAAPDV
0101: GQAAYPQAGQ LGQQHTQQPA QQHVPAQHQA SFQQVPYQQQ QAYMPNQPHQ YHSAHPQHMP YQHGPYMQPQ QQQQAPPYSY QADQQPQMPQ TAYNQAQQSP
0201: MPQAAYNQGQ SQQPPMPQAA YNQGQVQQPP MPQPSYNQGQ VQQPPMPQPS YNQGQQSMIP QSAYNQPQQP QMPHGAYNQG QQPQGVRIPQ SQGQHPQQSL
0301: SFHHPAQATQ SPQVSQPQGL KMPSQQGQLQ HGLPFTQHGK PPLSHGQQSP LLKDDDGVYE GKRTGFSLPL SQQRGQAPLP NQQLPSSHQN PGALSSQPNI
0401: PGVGGPLYPA KHLPGGSSSA ETNNMGFMNS PAHMHQGGAD TNYQQKPVSG HAVPNHAGPS PIRPPMGFDM GNSDGHFERD DSHSYGRFDG TKALQQQPKL
0501: APIPTSQNPM GMHNGPPYPR PDNFGGYNMA PPHSVPNPHN LGPLPIGTSV RPPSSMFAPP DFPSVSSADA YRQHHEVTAM GENVPAPFMT FEATGFPPEI
0601: LREIHAAGFS NPTPIQAQTW PVALQNRDIV AIAKTGSGKT LGYLIPAFIH LRRCHNNPML GPTVLVLAPT RELASQIQDE VVKFGQSSRV SCTCLYGGAS
0701: KGPQLRELER GADIVVATPG RLNDILEMKK ISLHQVSLLV LDEADRMLDM GFEPQIRKIV DEIPNTRQTL MYTATWPKEV TKIAGDLLRD PVQVNIGSID
0801: ELVANKSITQ YVEVVPPMDK QRRLEQILRD QERGSKIIIF CSTKKMCDQL ARGIGRNFNA VSIHGDKSQA ERDNVLNQFR TGRAPILVAT DVAARGLDIK
0901: DIRVVINYDF PTGIEDYVHR IGRTGRAGAT GVSYTFFSEQ DWKYAGDLVK LLQGANQHVP PQLQDMAARS ASGGPRNQAA GMSRWDGPGG RRFDPGAGGP
1001: VGYGGVREGP GGFSGREGPG GFGVRESPAM FGGREGPDGL GGRAGPGGFG SREGPGGFGG HEGPGGFGGR EGPGGFGGRK GPGGFGGRDG PGSGGFGGRG
1101: ERGSGGFGSR GGASPGGFGG RGGRGDSPGF GGRGRGDFSS FGGRGRGDSP GFGGRGRGDF SGGRGGRGRG FGGRGRSDRG PHDRFVSDGR GRYDNRRGFG
1201: DKGRDRSYSR SPDRGRSRGY DRRSDSRSIS RSRSRSRSWS RSRSRSRSWS RSRSRSSSRS RSRSRSRDHG AAPERRPRAR SGFDVLPPAT GAAGPAPVPV
1301: PVPGPAGPPV PALAPQQSLA DTSSMSPMSP GVLVQAPAAA PLICGGNDNS FGATPTGQPF QGTDGAFPSF PAGETFPGAA VQQAAPDV
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.