Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024533_P001 | Maize | nucleus | 95.76 | 95.49 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 84.18 | 85.22 |
| OQU79814 | Sorghum | nucleus | 67.33 | 72.44 |
| CDY72529 | Canola | cytosol | 42.28 | 72.07 |
| AT3G09620.2 | Thale cress | nucleus | 57.53 | 61.72 |
| KRH77709 | Soybean | nucleus | 63.65 | 61.23 |
| KRH27757 | Soybean | nucleus | 63.56 | 60.98 |
| CDY44720 | Canola | nucleus | 49.34 | 60.65 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 65.07 | 60.24 |
| PGSC0003DMT400011665 | Potato | nucleus | 62.99 | 60.0 |
| Bra029779.1-P | Field mustard | nucleus | 49.91 | 59.75 |
| Solyc12g098700.1.1 | Tomato | nucleus | 63.84 | 59.11 |
| CDY31513 | Canola | nucleus | 61.21 | 58.77 |
| CDY41597 | Canola | nucleus | 42.75 | 58.73 |
| Bra025856.1-P | Field mustard | nucleus | 64.22 | 58.24 |
| AT1G20920.3 | Thale cress | nucleus | 63.28 | 57.63 |
| GSMUA_Achr10P... | Banana | cytosol | 54.05 | 57.34 |
| KXG31614 | Sorghum | cytosol | 19.4 | 41.87 |
| EES04084 | Sorghum | cytosol | 20.43 | 37.54 |
| EER96257 | Sorghum | cytosol | 16.76 | 34.77 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 25.05 | 34.73 |
| EER92293 | Sorghum | cytosol | 18.27 | 31.39 |
| OQU76674 | Sorghum | cytosol | 16.57 | 31.04 |
| KXG37329 | Sorghum | cytosol, plastid | 17.89 | 29.92 |
| KXG34634 | Sorghum | plastid | 18.17 | 29.88 |
| KXG28851 | Sorghum | cytosol, plastid | 17.51 | 29.76 |
| OQU83862 | Sorghum | nucleus | 16.95 | 28.04 |
| OQU86230 | Sorghum | cytosol | 17.7 | 26.29 |
| KXG37746 | Sorghum | nucleus | 19.68 | 25.87 |
| KXG32714 | Sorghum | nucleus | 17.14 | 23.01 |
| OQU84042 | Sorghum | cytosol | 19.02 | 14.55 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | EntrezGene:8080853 | UniProt:C5YHD5 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| EnsemblPlants:EES14596 | ProteinID:EES14596 | ProteinID:EES14596.1 | GO:GO:0000166 | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | EnsemblPlantsGene:SORBI_3007G050400 | SUPFAM:SSF52540 | unigene:Sbi.19256 | UniParc:UPI0001A87C56 | RefSeq:XP_002445101.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:5098301..5104103
Molecular Weight (calculated)
119557.0 Da
IEP (calculated)
5.939
GRAVY (calculated)
-0.985
Length
1062 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSGDDERST SKHHHRDKDK DRDRSSSRHH RDKERDRDRE RERSSSRHHR DDGDRDRDRD RHHRDKERDR EERKEREREE RKAREREERE REKEKEKEKE
0101: RARRREERDR EERERSRRRG DADGEEDDDR DRKRRRRSSH HHHHHRDPEP ASREEEEVDA EEAERRRQRK KEEDMEAEQQ RLDDEMERRR RRVKEWQEKR
0201: REQQQQQDGG GAGGASAAAA AEADGVKVAG KKWTLDGEES DEEGDKEDGK KDEENGGAGD MDVDLPNGDG DANGGAGMEE DEIDPLDAFM NSMVLPEVAK
0301: LESAAAAMDT TAPGAGADDK NGKSSKDVVS NGDKKGSRKA IGRIMQGDDS ESDYDDADDD GAGEDDEDDE EFIKRVKKTK AEKLAIVDHS KIDYQPFRKN
0401: FYIEVKDISK MTSEEVVEYR KHLELKVHGK DVPKPIKTWV QSGLTSKLLD TIKKLGFEKP MPIQTQALPI IMSGRDCIGI AKTGSGKTLA FVLPMLRHVK
0501: DQPPVVPGDG PIGLIMAPTR ELVVQIHSDI KKFSKVLGIN CVAIYGGSGV AQQISELKRG AEIVVCTPGR MIDILCTSSG KITNLRRVTF LVMDEADRMF
0601: DMGFEPQITR IVQNTRPDRQ TVLFSATFPR QVEILARKVL TKPVEIQVGG RSVVNKDITQ LVEVRPDTER FFRLLELLGE WYVKGKILVF VHSQDKCDSL
0701: LKDLFQHGYP CLSLHGGKDQ TDRESTIADF KSNVCSLLIA TSVAARGLDV KELELVVNYD VPNHYEDYVH RVGRTGRAGR KGFAVTFISE EEERYAPDLV
0801: KALELSEQAV PQDLKALADR FMAKVKQGTE QAHGTGYGGS GFKFNEEEDE ARKTAKKAQA REYGYEEDKS DSDSDEEGGV RKAGGDLAAQ AIANAHAAAA
0901: LVANKAANNV NQQIPGSATV PLIPLLAATN QQNDEATARA LQAAMNLQQN LARIQAHAVP EHYEAELEIN DFPQNARWRI THKETLAPIQ DWTGAAITTR
1001: GTYIPQGKIV GANERKLYLF IEGPTESSVK KAKAELKRVL EDCANQALNL PGSAQTGKYS VI
0101: RARRREERDR EERERSRRRG DADGEEDDDR DRKRRRRSSH HHHHHRDPEP ASREEEEVDA EEAERRRQRK KEEDMEAEQQ RLDDEMERRR RRVKEWQEKR
0201: REQQQQQDGG GAGGASAAAA AEADGVKVAG KKWTLDGEES DEEGDKEDGK KDEENGGAGD MDVDLPNGDG DANGGAGMEE DEIDPLDAFM NSMVLPEVAK
0301: LESAAAAMDT TAPGAGADDK NGKSSKDVVS NGDKKGSRKA IGRIMQGDDS ESDYDDADDD GAGEDDEDDE EFIKRVKKTK AEKLAIVDHS KIDYQPFRKN
0401: FYIEVKDISK MTSEEVVEYR KHLELKVHGK DVPKPIKTWV QSGLTSKLLD TIKKLGFEKP MPIQTQALPI IMSGRDCIGI AKTGSGKTLA FVLPMLRHVK
0501: DQPPVVPGDG PIGLIMAPTR ELVVQIHSDI KKFSKVLGIN CVAIYGGSGV AQQISELKRG AEIVVCTPGR MIDILCTSSG KITNLRRVTF LVMDEADRMF
0601: DMGFEPQITR IVQNTRPDRQ TVLFSATFPR QVEILARKVL TKPVEIQVGG RSVVNKDITQ LVEVRPDTER FFRLLELLGE WYVKGKILVF VHSQDKCDSL
0701: LKDLFQHGYP CLSLHGGKDQ TDRESTIADF KSNVCSLLIA TSVAARGLDV KELELVVNYD VPNHYEDYVH RVGRTGRAGR KGFAVTFISE EEERYAPDLV
0801: KALELSEQAV PQDLKALADR FMAKVKQGTE QAHGTGYGGS GFKFNEEEDE ARKTAKKAQA REYGYEEDKS DSDSDEEGGV RKAGGDLAAQ AIANAHAAAA
0901: LVANKAANNV NQQIPGSATV PLIPLLAATN QQNDEATARA LQAAMNLQQN LARIQAHAVP EHYEAELEIN DFPQNARWRI THKETLAPIQ DWTGAAITTR
1001: GTYIPQGKIV GANERKLYLF IEGPTESSVK KAKAELKRVL EDCANQALNL PGSAQTGKYS VI
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.