Factsheet for VIT_17s0000g06270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091070.1.1	Tomato	nucleus	65.13	90.27
PGSC0003DMT400050235	Potato	plastid	82.08	82.28
Solyc03g115990.1.1	Tomato	plastid	81.84	82.04
VIT_14s0108g00870.t01	Wine grape	plastid	84.99	82.01
PGSC0003DMT400065411	Potato	plastid	81.36	81.55
PGSC0003DMT400030247	Potato	plastid	81.36	81.55
Os08t0434300-01	Rice	plastid	69.98	81.18
KRH56907	Soybean	endoplasmic reticulum	79.18	79.18
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	77.97	78.73
Os01t0829800-01	Rice	plastid	74.58	77.78
GSMUA_Achr6P02650_001	Banana	plastid	77.48	76.92
GSMUA_Achr7P11540_001	Banana	plastid	77.0	76.44
CDY61271	Canola	plastid	73.85	76.25
AT3G47520.1	Thale cress	plastid	74.33	76.18
GSMUA_Achr5P23320_001	Banana	peroxisome	57.87	76.11
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	73.12	76.07
OQU80513	Sorghum	plastid	72.4	75.89
TraesCS7B01G289400.1	Wheat	plastid	72.4	75.89
TraesCS1A01G348500.1	Wheat	plastid	72.88	75.63
TraesCS7A01G386600.1	Wheat	plastid	71.91	75.38
TraesCS1B01G363100.1	Wheat	plastid	72.64	75.38
HORVU1Hr1G081550.1	Barley	plastid	72.64	75.19
Bra018137.1-P	Field mustard	plastid	72.88	74.88
TraesCS1D01G351500.1	Wheat	golgi, plastid	72.16	74.87
Zm00001d032187_P001	Maize	plastid	71.19	74.62
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.09	72.96
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.09	72.96
TraesCS7D01G383100.1	Wheat	plastid, vacuole	72.4	72.05
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	65.13	71.93
HORVU7Hr1G091760.2	Barley	mitochondrion	72.88	64.87
CDY47402	Canola	plastid	73.37	64.47
VIT_19s0014g01640.t01	Wine grape	mitochondrion	49.15	58.5
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	50.36	58.43
VIT_10s0003g01000.t01	Wine grape	mitochondrion	48.67	57.1
AT3G53910.1	Thale cress	cytosol	13.8	52.78
VIT_00s0373g00040.t01	Wine grape	peroxisome	51.09	48.62
CDX77861	Canola	plastid	31.23	45.1

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100265585	wikigene:100265585	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10
EMBL:AM471913	ProteinID:CAN70578	ProteinID:CAN70578.1	ProteinID:CCB43083	ProteinID:CCB43083.1	UniProt:F6GT74
EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	EntrezGene:LOC100265585	wikigene:LOC100265585
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00015C8C3A	ArrayExpress:VIT_17s0000g06270	EnsemblPlantsGene:VIT_17s0000g06270	EnsemblPlants:VIT_17s0000g06270.t01
unigene:Vvi.15764	RefSeq:XP_002284909	RefSeq:XP_002284909.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:6803673..6806402

Molecular Weight (calculated)

43606.4 Da

IEP (calculated)

8.190

GRAVY (calculated)

0.110

Length

413 amino acids

Sequence
(BLAST)

001: MAATSLTTIT IGSSASIGSK AIPLSRSKCF GVSFNSQNYL KSFSGLKAAS SISCESEASF LGKESSAALR NSFAPKAGKQ NLRHQYYLQP QASSSKVAIL
101: GAAGGIGQPL ALLIKMSPLV SALHLYDIAN VKGVAADLSH CNTPAQVLDF TGTSELANSL KGVDVVVIPA GVPRKPGMTR DDLFNINANI VKTLVEAVAD
201: NCPDAFIHII SNPVNSTVPI AVEVLRRKGV YDPKKVFGVT TLDVVRANTF VAQKKNLRLI DVDVPVVGGH AGITILPLLS RTKPSVSFTD EEVEELTVRI
301: QNAGTEVVEA KAGAGSATLS MAYAAARFVE SSLRALDGDT DVYECAYVQS ELTELPFFAS RVKIGKKGIE AVISSDLQGL TEYEEKALEA LKPELKASIE
401: KGVAFAQKQT VTA

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.