CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091070.1.1	Tomato	nucleus	42.66	40.94
GSMUA_Achr5P23320_001	Banana	peroxisome	43.71	39.81
Os08t0434300-01	Rice	plastid	43.36	34.83
CDY61271	Canola	plastid	48.6	34.75
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	46.85	32.76
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	45.45	32.75
Os01t0829800-01	Rice	plastid	45.1	32.58
OQU80513	Sorghum	plastid	44.76	32.49
KRH56907	Soybean	endoplasmic reticulum	46.5	32.2
Zm00001d032187_P001	Maize	plastid	44.06	31.98
TraesCS7A01G386600.1	Wheat	plastid	43.71	31.73
TraesCS7B01G289400.1	Wheat	plastid	43.71	31.73
Solyc03g115990.1.1	Tomato	plastid	45.45	31.55
PGSC0003DMT400050235	Potato	plastid	45.45	31.55
GSMUA_Achr7P11540_001	Banana	plastid	45.8	31.49
TraesCS1D01G351500.1	Wheat	golgi, plastid	43.71	31.41
TraesCS1B01G363100.1	Wheat	plastid	43.71	31.41
TraesCS1A01G348500.1	Wheat	plastid	43.71	31.41
HORVU1Hr1G081550.1	Barley	plastid	43.71	31.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	40.91	31.28
VIT_17s0000g06270.t01	Wine grape	plastid	45.1	31.23
GSMUA_Achr6P02650_001	Banana	plastid	45.1	31.01
PGSC0003DMT400030247	Potato	plastid	44.41	30.83
PGSC0003DMT400065411	Potato	plastid	44.41	30.83
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	17.13	30.82
TraesCS7D01G383100.1	Wheat	plastid, vacuole	44.06	30.36
VIT_14s0108g00870.t01	Wine grape	plastid	45.1	30.14
CDY55842	Canola	mitochondrion	13.99	29.63
CDY47402	Canola	plastid	47.9	29.15
AT3G53910.1	Thale cress	cytosol	10.84	28.7
HORVU7Hr1G091760.2	Barley	mitochondrion	44.76	27.59
CDY24107	Canola	mitochondrion	32.17	27.06
CDY02518	Canola	mitochondrion	32.17	26.98
CDY26002	Canola	mitochondrion	32.17	26.82
CDY59402	Canola	mitochondrion	31.82	26.69
CDY55845	Canola	mitochondrion	31.12	26.1
CDY25868	Canola	mitochondrion	31.12	26.1
CDY21594	Canola	cytosol	32.17	25.7
CDY44813	Canola	cytosol	32.17	25.7
CDX85803	Canola	plastid	32.17	25.7
CDY25631	Canola	plastid	31.12	25.21
CDX89514	Canola	cytosol	31.12	25.21
CDX98040	Canola	cytosol	13.29	22.75
CDY17513	Canola	cytosol	11.19	20.51
CDY19424	Canola	cytosol	11.54	19.41
CDY34030	Canola	mitochondrion	17.83	18.28
CDY43430	Canola	cytosol	10.84	17.92
CDX69893	Canola	cytosol	32.52	16.85

Protein Annotations

Gene3D:3.90.110.10	MapMan:35.1	GO:A0A078CKX8	EnsemblPlants:CDX77861	ProteinID:CDX77861	ProteinID:CDX77861.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016616
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00129044001	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:NAD(P)-bd_dom_sf
PFAM:PF02866	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	SUPFAM:SSF51735	SUPFAM:SSF56327	UniParc:UPI0004EF2FED
SEG:seg	:	:	:	:	:

Description

BnaC03g53580D

Coordinates

chrLK031813:+:1183967..1186068

Molecular Weight (calculated)

31874.0 Da

IEP (calculated)

9.306

GRAVY (calculated)

-0.309

Length

286 amino acids

Sequence
(BLAST)

001: MRTKEKQHSS HSFTRLTTLS FTSPHSPCHT CLALQHSLSS RRHTALPLAP RCHTAVSLVP RRHKSPSLLN NAHIMFSFEY RSKCLSFRLN RSFRQDFTEK
101: TSKTLFSRKV QVKRQENVDL LSFLQLTRTV LDFTGPSELA DCLKDVNVVV IPAGVPRKYA VADNCPNAFI HIINNPVNSA VPIAAQVLKK KEFQELTVRD
201: SECWNWGRDA KAGAGSATLS IAYAAARFVE SSLRALDGDG DVYECSFVES DLQGLTEYEH NALEALKPEL KASIDKGIAF ANKPAN

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.