CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009397.1-P	Field mustard	cytosol	64.86	100.0
CDY21594	Canola	cytosol	63.77	98.32
CDX85803	Canola	plastid	62.14	95.81
CDY44813	Canola	cytosol	62.14	95.81
KRH42019	Soybean	nucleus	56.16	87.08
KRH49884	Soybean	endoplasmic reticulum, nucleus	55.43	85.96
GSMUA_Achr4P01380_001	Banana	plasma membrane	53.8	83.43
CDY25631	Canola	plastid	51.63	80.74
AT5G09660.4	Thale cress	cytosol	53.08	80.72
CDX89514	Canola	cytosol	51.45	80.45
Os12t0632700-01	Rice	extracellular, nucleus, plastid	51.63	80.06
TraesCS5D01G019700.1	Wheat	nucleus	51.09	78.77
TraesCS5A01G014300.1	Wheat	nucleus, plastid	50.91	78.49
Zm00001d041243_P001	Maize	mitochondrion	51.09	78.33
TraesCS5B01G012400.1	Wheat	cytosol	50.54	77.93
HORVU5Hr1G002010.1	Barley	plastid	52.36	70.66
CDY43430	Canola	cytosol	21.74	69.36
CDY17513	Canola	cytosol	19.38	68.59
KXG24112	Sorghum	plastid	52.72	65.25
CDY25868	Canola	mitochondrion	38.41	62.17
CDY55845	Canola	mitochondrion	38.41	62.17
CDY59402	Canola	mitochondrion	38.41	62.17
CDY24107	Canola	mitochondrion	38.22	62.06
CDY02518	Canola	mitochondrion	38.22	61.88
CDY26002	Canola	mitochondrion	38.22	61.52
CDY55842	Canola	mitochondrion	14.67	60.0
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	15.94	55.35
CDY61271	Canola	plastid	37.86	52.25
CDY47402	Canola	plastid	39.13	45.96
CDY34030	Canola	mitochondrion	21.38	42.29
CDX98040	Canola	cytosol	11.96	39.52
CDY19424	Canola	cytosol	11.59	37.65
CDX77861	Canola	plastid	16.85	32.52

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.10.120.10	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:A0A078C4D6
EnsemblPlants:CDX69893	ProteinID:CDX69893	ProteinID:CDX69893.1	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:Cyt_B5_heme-BS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0020037	GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00135961001	InterPro:IPR001199
InterPro:IPR015955	InterPro:IPR036400	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF00173	PFAM:PF02866	ScanProsite:PS00068
ScanProsite:PS00191	PFscan:PS50255	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	MetaCyc:PWY-1622	MetaCyc:PWY-5392
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115
MetaCyc:PWY-7383	SMART:SM01117	SUPFAM:SSF51735	SUPFAM:SSF55856	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
UniParc:UPI0004EF29FB	SEG:seg	:	:	:	:

Description

BnaA10g22420D

Coordinates

chrLK031790:+:2258126..2261516

Molecular Weight (calculated)

59374.9 Da

IEP (calculated)

8.444

GRAVY (calculated)

-0.086

Length

552 amino acids

Sequence
(BLAST)

001: MDTTKDDDFT FSKALQPDSQ VVLDAKDLAS NVDAIALKDG LDPPKENTIG SLSFTVTDSS SEMILKARKP ITRTKVPFEK GYSQMDWLKL TRTHPDLAGL
101: KGESNRRLIS MDEVKKHKSG DSMWTVLKGR VYNISPYMNF HPGGVDMLMK AVGRDGTLLF NKYHAWVNFD VLLEKCLVGV LDDSKLQTKK ENTIMEFRGD
201: ATQRIAMISA HLQPSFTSQM EGKNTVMGRE NCRGKGGKAG FKVAILGAAG GIGQSLSLLM KMNPLVSLLH LYDVVNAPGV TADVSHMDTG AVVRGFLGAK
301: QLADALTGMD LVIIPAGVPR KPGMTRDDLF KINAGIVKTL CEGVAKCCPN AIVNLISNPV NSTVAIAAEV FKKAGTYDPK KLLGVTTLDV ARANTFVAEV
401: LGLDPREVDV PVVGGHAGVT ILPLLSQVKP PSSFTPSETE YLTNRIQNGG TEVVEAKAGA GSATLSMAYA AAKFADACLR GLRGDANVVE CSFVASQVTE
501: LPFFATKVRL GRTGAEEVYQ LGPLNEYERV GLEKAKEELA GSIQKGVDFI RK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.