Factsheet for Bra009397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028624.1-P	Field mustard	cytosol	95.81	95.81
KRH42019	Soybean	nucleus	86.59	87.08
KRH49884	Soybean	endoplasmic reticulum, nucleus	85.47	85.96
GSMUA_Achr4P01380_001	Banana	plasma membrane	82.96	83.43
Bra030204.1-P	Field mustard	cytosol	79.61	80.74
AT5G09660.4	Thale cress	cytosol	81.84	80.72
Os12t0632700-01	Rice	extracellular, nucleus, plastid	79.61	80.06
TraesCS5D01G019700.1	Wheat	nucleus	78.77	78.77
TraesCS5A01G014300.1	Wheat	nucleus, plastid	78.49	78.49
Zm00001d041243_P001	Maize	mitochondrion	78.77	78.33
TraesCS5B01G012400.1	Wheat	cytosol	77.93	77.93
HORVU5Hr1G002010.1	Barley	plastid	78.49	68.7
CDX69893	Canola	cytosol	100.0	64.86
KXG24112	Sorghum	plastid	78.77	63.23
Bra030951.1-P	Field mustard	mitochondrion	58.94	61.88
Bra038112.1-P	Field mustard	mitochondrion	53.63	61.54
Bra039662.1-P	Field mustard	mitochondrion	58.38	61.47
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.3	54.72
Bra018137.1-P	Field mustard	plastid	58.1	51.74
Bra019790.1-P	Field mustard	plastid	32.12	29.41

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	EnsemblPlantsGene:Bra009397	EnsemblPlants:Bra009397.1
EnsemblPlants:Bra009397.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M4CYV0	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000254767A	:

Description

AT5G09660 (E=1e-188) PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase

Coordinates

chrA10:-:16464843..16466508

Molecular Weight (calculated)

37635.8 Da

IEP (calculated)

8.356

GRAVY (calculated)

0.109

Length

358 amino acids

Sequence
(BLAST)

001: MEFRGDATQR IAMISAHLQP SFTSQMEGKN TVMGRENCRG KGGKAGFKVA ILGAAGGIGQ SLSLLMKMNP LVSLLHLYDV VNAPGVTADV SHMDTGAVVR
101: GFLGAKQLAD ALTGMDLVII PAGVPRKPGM TRDDLFKINA GIVKTLCEGV AKCCPNAIVN LISNPVNSTV AIAAEVFKKA GTYDPKKLLG VTTLDVARAN
201: TFVAEVLGLD PREVDVPVVG GHAGVTILPL LSQVKPPSSF TPSETEYLTN RIQNGGTEVV EAKAGAGSAT LSMAYAAAKF ADACLRGLRG DANVVECSFV
301: ASQVTELPFF ATKVRLGRTG AEEVYQLGPL NEYERVGLEK AKEELAGSIQ KGVDFIRK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.