Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • plastid 2
  • mitochondrion 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002826.1-P
Bra010844.1-P
Bra028938.1-P
Bra032295.1-P
Bra035613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G22780.1 Bra010844.1-P AT1G29260.1 24879895
AT2G22780.1 Bra032295.1-P AT1G29260.1 24879895
AT2G22780.1 Bra002826.1-P AT5G56290.1 24879895
AT2G22780.1 Bra028938.1-P AT5G56290.1 24879895
AT2G22780.1 Bra035613.1-P AT5G56290.1 24879895
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25631 Canola plastid 99.72 99.72
CDX89514 Canola cytosol 98.58 98.58
AT2G22780.1 Thale cress cytosol 94.05 93.79
Solyc02g063490.2.1 Tomato plastid 83.57 83.81
PGSC0003DMT400026930 Potato plastid 83.57 83.81
Bra028624.1-P Field mustard cytosol 81.3 80.17
KRH28298 Soybean endoplasmic reticulum, nucleus 79.89 79.89
Bra009397.1-P Field mustard cytosol 80.74 79.61
Os12t0632700-01 Rice extracellular, nucleus, plastid 79.89 79.21
GSMUA_Achr4P01380_001 Banana plasma membrane 79.6 78.93
TraesCS5A01G014300.1 Wheat nucleus, plastid 78.75 77.65
TraesCS5D01G019700.1 Wheat nucleus 78.47 77.37
Zm00001d041243_P001 Maize mitochondrion 78.47 76.94
KRH77189 Soybean endoplasmic reticulum 62.89 76.82
TraesCS5B01G012400.1 Wheat cytosol 77.9 76.82
KRH48807 Soybean mitochondrion 30.31 72.3
VIT_00s0373g00040.t01 Wine grape peroxisome 83.85 68.2
HORVU5Hr1G002010.1 Barley plastid 78.75 67.97
Bra038112.1-P Field mustard mitochondrion 55.52 62.82
KXG24112 Sorghum plastid 78.75 62.33
Bra030951.1-P Field mustard mitochondrion 60.06 62.17
Bra039662.1-P Field mustard mitochondrion 59.49 61.76
Bra019504.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 24.65 54.72
Bra018137.1-P Field mustard plastid 57.79 50.75
Bra019790.1-P Field mustard plastid 32.86 29.67
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:5.7.3.6.5EnsemblPlantsGene:Bra030204EnsemblPlants:Bra030204.1
EnsemblPlants:Bra030204.1-PGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005777GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108
GO:GO:0006629GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009507GO:GO:0009536
GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060
GO:GO:0031998GO:GO:0055114GO:GO:0080093InterPro:IPR015955InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CUniProt:M4EN34InterPro:Malate_DH_ASInterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR11540PANTHER:PTHR11540:SF21
SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01772UniParc:UPI00025443EF::
Description
AT2G22780 (E=1e-187) PMDH1 | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor
Coordinates
chrA04:-:10032268..10034796
Molecular Weight (calculated)
37072.4 Da
IEP (calculated)
7.767
GRAVY (calculated)
0.179
Length
353 amino acids
Sequence
(BLAST)
001: MDANQRIARI SAHLNPPNLD QIGSGSGLEG VGCRAKGGSP GFKVAILGAA GGIGQPLAML MKMNPLVSLL HLYDVANAPG VTADISHMDT SAIVRGFLGQ
101: SQLEEALTGM DLVIIPAGVP RKPGMTRDDL FKINAGIVRT LSEAIAKCCP KAIVNIISNP VNSTVPIAAE VFKKAGTFDP KKLMGVTMLD VVRANTFVAE
201: VMSLDPREVD VPVVGGHAGV TILPLLSQVK PPCSFTQNEI EYLTDRIQNG GTEVVEAKAG AGSATLSMAY AAVKFADACL KGLRGDANIV ECAFVASHVT
301: ELPFFASKVR LGRCGVDEVY GLGPLNEYER MGLEKAKKEL EGSIAKGVTF VKK
Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)
001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK
Arabidopsis Description
PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.