Factsheet for HORVU5Hr1G002010.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G082800.3
HORVU7Hr1G049220.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	HORVU3Hr1G082800.3	AT1G29260.1	24879895
AT2G22780.1	HORVU7Hr1G049220.10	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G012400.1	Wheat	cytosol	86.06	98.32
TraesCS5D01G019700.1	Wheat	nucleus	85.57	97.77
TraesCS5A01G014300.1	Wheat	nucleus, plastid	85.57	97.77
Os12t0632700-01	Rice	extracellular, nucleus, plastid	79.71	91.57
Zm00001d041243_P001	Maize	mitochondrion	77.26	87.78
GSMUA_Achr5P02000_001	Banana	unclear	75.79	87.08
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	71.88	82.58
KRH49884	Soybean	endoplasmic reticulum, nucleus	70.9	81.46
HORVU5Hr1G098890.10	Barley	plastid	71.88	81.44
KRH28298	Soybean	endoplasmic reticulum, nucleus	70.17	81.3
KRH42019	Soybean	nucleus	70.66	81.18
PGSC0003DMT400026930	Potato	plastid	69.19	80.4
Solyc02g063490.2.1	Tomato	plastid	68.95	80.11
PGSC0003DMT400013106	Potato	cytosol	69.68	79.83
AT2G22780.1	Thale cress	cytosol	68.7	79.38
CDY44813	Canola	cytosol	68.95	78.77
CDY21594	Canola	cytosol	68.95	78.77
CDX85803	Canola	plastid	68.95	78.77
Bra028624.1-P	Field mustard	cytosol	68.95	78.77
CDY25631	Canola	plastid	67.97	78.75
Bra030204.1-P	Field mustard	cytosol	67.97	78.75
Bra009397.1-P	Field mustard	cytosol	68.7	78.49
CDX89514	Canola	cytosol	67.24	77.9
KRH77189	Soybean	endoplasmic reticulum	54.28	76.82
KXG24112	Sorghum	plastid	83.62	76.68
KRH48807	Soybean	mitochondrion	26.41	72.97
AT5G09660.4	Thale cress	cytosol	62.35	70.25
VIT_00s0373g00040.t01	Wine grape	peroxisome	72.37	68.2
CDY43430	Canola	cytosol	28.12	66.47
HORVU3Hr1G058460.1	Barley	mitochondrion	55.26	66.28
CDY17513	Canola	cytosol	24.94	65.38
CDX69893	Canola	cytosol	70.66	52.36
HORVU1Hr1G081550.1	Barley	plastid	49.39	50.63
HORVU7Hr1G091760.2	Barley	mitochondrion	51.34	45.26
HORVU1Hr1G090710.1	Barley	cytosol	43.52	44.61
CDY34030	Canola	mitochondrion	27.63	40.5
HORVU1Hr1G090720.1	Barley	peroxisome	11.98	23.22
HORVU5Hr1G020370.1	Barley	cytosol	0.0	0.0

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	UniProt:A0A287Q768	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:HORVU5Hr1G002010	EnsemblPlants:HORVU5Hr1G002010.1	InterPro:IPR015955	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01772	UniParc:UPI000B47101D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:5615657..5621880

Molecular Weight (calculated)

42617.6 Da

IEP (calculated)

8.285

GRAVY (calculated)

0.112

Length

409 amino acids

Sequence
(BLAST)

001: ATFASSPSTL HTSFLPPPQP PPLLRPPQSL FSSRLSSPPE SPATTHATST AMEQGADSPA ARRMARVASH LRPPTSQIEE VAILKGSNCR AKGAAPGFKV
101: AVLGASGGIG QPLSLLMKMN PLVSVLHLYD VVNTPGVTAD ISHMNTGAVV RGFLGQPQLE SALTGMDLVI IPAGIPRKPG MTRDDLFNIN AGIVRTLCEG
201: IAKCCPNAIV NVISNPVNST VPIAAEVFKK AGTYDPKRLL GVTTLDVVRA NTFVGEVLGL DPRDVNVPVV GGHAGVTILP LLSQVNPPCS FTSEEISYLT
301: SRIQNGGTEV VEAKAGAGSA TLSMAYAAAK FADACLRGLR GDAGIVECSY IASQVTELPF FASKVRLGRA GVEEVLPLGP LNEFERAGLE KAQGELAESI
401: RKGVAFANK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.