CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49884	Soybean	endoplasmic reticulum, nucleus	97.47	97.47
Bra009397.1-P	Field mustard	cytosol	87.08	86.59
CDY21594	Canola	cytosol	86.8	86.31
Bra028624.1-P	Field mustard	cytosol	86.52	86.03
CDX85803	Canola	plastid	86.52	86.03
CDY44813	Canola	cytosol	86.52	86.03
GSMUA_Achr4P01380_001	Banana	plasma membrane	83.15	83.15
Os12t0632700-01	Rice	extracellular, nucleus, plastid	81.74	81.74
KRH28298	Soybean	endoplasmic reticulum, nucleus	80.34	81.02
TraesCS5A01G014300.1	Wheat	nucleus, plastid	80.9	80.45
TraesCS5B01G012400.1	Wheat	cytosol	80.9	80.45
TraesCS5D01G019700.1	Wheat	nucleus	80.9	80.45
Zm00001d041243_P001	Maize	mitochondrion	79.49	78.61
KRH77189	Soybean	endoplasmic reticulum	61.24	75.43
AT5G09660.4	Thale cress	cytosol	75.0	73.55
KRH48807	Soybean	mitochondrion	30.34	72.97
HORVU5Hr1G002010.1	Barley	plastid	81.18	70.66
KXG24112	Sorghum	plastid	80.9	64.57
KRH55117	Soybean	mitochondrion	61.52	63.48
KRH26205	Soybean	mitochondrion	60.96	62.9
CDX69893	Canola	cytosol	87.08	56.16
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	57.87	50.37
KRH56907	Soybean	endoplasmic reticulum	57.58	49.64

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	EMBL:ACUP02004784	EnsemblPlantsGene:GLYMA_08G063800
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	UniProt:I1KQU5	InterPro:IPR015955	EnsemblPlants:KRH42019
ProteinID:KRH42019	ProteinID:KRH42019.1	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00023C6631	:	:

Description

hypothetical protein

Coordinates

chr8:+:4896436..4899872

Molecular Weight (calculated)

37424.5 Da

IEP (calculated)

8.464

GRAVY (calculated)

0.112

Length

356 amino acids

Sequence
(BLAST)

001: MEARAGANQR IARISAHLQP SNFQEGSDVL LKRGECRAKG GAPGFKVAIL GAAGGIGQSL SLLMKMNPLV SVLHLYDVVN TPGVTADVSH MDTGAVVRGF
101: LGQQQLESAL TGMDLVIIPA GVPRKPGMTR DDLFKINAGI VRTLSEGIAK CCPNAIVNLI SNPVNSTVAI AAEVFKKAGT YDPKRLLGVT TLDVVRANTF
201: VAEILGVDPR EVDVPVVGGH AGVTILPLLS QVKPPSSFTA EETEYLTNRI QNGGTEVVEA KAGAGSATLS MAYAAAKFAG ACLRGLKGEA GVVECAFVDS
301: QVTELPFFAT KVRLGRAGAE EVYQLGPLNE YERIGLEKAK RELAGSIQKG VEFIRK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.