Factsheet for TraesCS5D01G019700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3D01G373900.1
TraesCS6A01G105000.1
TraesCS7A01G241500.5
TraesCS7B01G137000.2
TraesCS7D01G240500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	TraesCS3D01G373900.1	AT1G29260.1	24879895
AT2G22780.1	TraesCS6A01G105000.1	AT5G56290.1	24879895
AT2G22780.1	TraesCS7A01G241500.5	AT5G56290.1	24879895
AT2G22780.1	TraesCS7B01G137000.2	AT5G56290.1	24879895
AT2G22780.1	TraesCS7D01G240500.3	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G014300.1	Wheat	nucleus, plastid	98.32	98.32
TraesCS5B01G012400.1	Wheat	cytosol	97.49	97.49
Os12t0632700-01	Rice	extracellular, nucleus, plastid	91.34	91.85
Zm00001d041243_P001	Maize	mitochondrion	87.99	87.5
GSMUA_Achr5P02000_001	Banana	unclear	86.87	87.36
HORVU5Hr1G002010.1	Barley	plastid	97.77	85.57
TraesCS5D01G417600.1	Wheat	nucleus	82.96	83.19
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	82.68	83.15
KRH49884	Soybean	endoplasmic reticulum, nucleus	80.73	81.18
KRH28298	Soybean	endoplasmic reticulum, nucleus	79.89	81.02
PGSC0003DMT400026930	Potato	plastid	79.61	80.97
KRH42019	Soybean	nucleus	80.45	80.9
Solyc02g063490.2.1	Tomato	plastid	79.33	80.68
PGSC0003DMT400013106	Potato	cytosol	79.89	80.11
AT2G22780.1	Thale cress	cytosol	78.49	79.38
CDY21594	Canola	cytosol	79.33	79.33
CDY44813	Canola	cytosol	79.05	79.05
CDX85803	Canola	plastid	79.05	79.05
Bra028624.1-P	Field mustard	cytosol	79.05	79.05
Bra009397.1-P	Field mustard	cytosol	78.77	78.77
CDY25631	Canola	plastid	77.37	78.47
Bra030204.1-P	Field mustard	cytosol	77.37	78.47
CDX89514	Canola	cytosol	76.54	77.62
KRH77189	Soybean	endoplasmic reticulum	61.73	76.47
KXG24112	Sorghum	plastid	90.5	72.65
KRH48807	Soybean	mitochondrion	29.89	72.3
AT5G09660.4	Thale cress	cytosol	70.95	69.97
VIT_00s0373g00040.t01	Wine grape	peroxisome	81.84	67.51
TraesCS3D01G236200.1	Wheat	mitochondrion	63.13	66.47
CDY43430	Canola	cytosol	31.84	65.9
CDY17513	Canola	cytosol	28.49	65.38
TraesCS1D01G420500.1	Wheat	mitochondrion	61.45	64.52
CDX69893	Canola	cytosol	78.77	51.09
TraesCS1D01G351500.1	Wheat	golgi, plastid	56.42	50.75
TraesCS7D01G383100.1	Wheat	plastid, vacuole	56.98	49.16
CDY34030	Canola	mitochondrion	31.84	40.86

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS5D01G019700	EnsemblPlants:TraesCS5D01G019700.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:12591895..12595805

Molecular Weight (calculated)

37352.5 Da

IEP (calculated)

7.991

GRAVY (calculated)

0.197

Length

358 amino acids

Sequence
(BLAST)

001: MEQGTDSAAA RRMARVASHL CPPTSQMEEV AILKGSNCRA KGAAPGFKVA VLGASGGIGQ PLSLLMKMNP LVSVLHLYDV VNTPGVTADI SHMNTGAVVR
101: GFLGQPQLES ALTGMDLVII PAGIPRKPGM TRDDLFNINA GIVRTLCEGI AKCCPNAIVN VISNPVNSTV PIAAEVFKKA GTYYPKRLLG VTTLDVVRAN
201: TFVGEVLGLD PRDVNVPVVG GHAGVTILPL LSQVNPPCSF TSEEISYLTS RIQNGGTEVV EAKAGAGSAT LSMAYAAAKF ADACLRGLRG DAGIVECSYI
301: ASQVTELPFF ASKVRLGRSG VEEVLPLGPL NEFERAGLEK AKGELAESIH KGVAFANK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.