CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
plastid 1
mitochondrion 3
peroxisome 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	peroxisome

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH11018
KRH21268
KRH23029
KRH24840
KRH29844
KRH56371
KRH62568

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	KRH11018	AT1G29260.1	24879895
AT2G22780.1	KRH21268	AT1G29260.1	24879895
AT2G22780.1	KRH10294	AT3G46090.1	17259181
AT2G22780.1	KRH23029	AT3G46090.1	17259181
AT2G22780.1	KRH24840	AT3G46090.1	17259181
AT2G22780.1	KRH29844	AT3G46090.1	17259181
AT2G22780.1	KRH56371	AT5G56290.1	24879895
AT2G22780.1	KRH62568	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48807	Soybean	mitochondrion	41.18	80.41
KRH28298	Soybean	endoplasmic reticulum, nucleus	88.93	72.8
CDY17513	Canola	cytosol	36.33	67.31
CDY43430	Canola	cytosol	40.14	67.05
Solyc02g063490.2.1	Tomato	plastid	79.93	65.62
PGSC0003DMT400026930	Potato	plastid	79.93	65.62
Os12t0632700-01	Rice	extracellular, nucleus, plastid	77.85	63.2
CDY25631	Canola	plastid	77.16	63.17
Bra030204.1-P	Field mustard	cytosol	76.82	62.89
AT2G22780.1	Thale cress	cytosol	76.82	62.71
CDX89514	Canola	cytosol	76.47	62.61
GSMUA_Achr4P01380_001	Banana	plasma membrane	76.47	62.08
TraesCS5A01G014300.1	Wheat	nucleus, plastid	76.82	62.01
Zm00001d041243_P001	Maize	mitochondrion	77.16	61.94
TraesCS5D01G019700.1	Wheat	nucleus	76.47	61.73
TraesCS5B01G012400.1	Wheat	cytosol	76.12	61.45
KRH42019	Soybean	nucleus	75.43	61.24
KRH49884	Soybean	endoplasmic reticulum, nucleus	75.09	60.96
HORVU5Hr1G002010.1	Barley	plastid	76.82	54.28
VIT_00s0373g00040.t01	Wine grape	peroxisome	81.31	54.15
KRH26205	Soybean	mitochondrion	61.25	51.3
KRH55117	Soybean	mitochondrion	61.25	51.3
KXG24112	Sorghum	plastid	77.85	50.45
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	58.13	41.08
KRH56907	Soybean	endoplasmic reticulum	58.48	40.92
CDY34030	Canola	mitochondrion	34.6	35.84

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:35.1	EMBL:ACUP02000659	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G197700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	UniProt:K7K4T0	EnsemblPlants:KRH77189	ProteinID:KRH77189
ProteinID:KRH77189.1	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	PANTHER:PTHR11540	PANTHER:PTHR11540:SF34
MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728
MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
UniParc:UPI000294AEE2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:53158355..53163611

Molecular Weight (calculated)

30924.6 Da

IEP (calculated)

6.520

GRAVY (calculated)

0.176

Length

289 amino acids

Sequence
(BLAST)

001: MRFSAGERPF STYALFTFFV RGFLGQQQLE DALIGMDLVI IPAGVPRKPG MTRDDLFNIN AGIVKTLCEA IAKCCPKAIV NFISNPVNST VPIEAEVFKS
101: AGTYDPKRLL GVTMLSVVRA NTFVAEVLGV DPRDVDVPVV GGHAGITILP LLSQIKPPCS FTPKEIEYLT DRIQNGGTEV VEAKAGAGSA TLSMAYAAVK
201: FADACLHALR GDAGIIECAY VASQVAELPF FASKVRLGRG GVEEILPLGP LNDCERESLE KAKKELAASI EKGISFIRKS VVDDSSSRK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.