CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42019	Soybean	nucleus	97.47	97.47
Bra009397.1-P	Field mustard	cytosol	85.96	85.47
Bra028624.1-P	Field mustard	cytosol	85.67	85.2
CDX85803	Canola	plastid	85.67	85.2
CDY21594	Canola	cytosol	85.67	85.2
CDY44813	Canola	cytosol	85.67	85.2
GSMUA_Achr4P01380_001	Banana	plasma membrane	83.43	83.43
Os12t0632700-01	Rice	extracellular, nucleus, plastid	82.02	82.02
KRH28298	Soybean	endoplasmic reticulum, nucleus	80.06	80.74
TraesCS5A01G014300.1	Wheat	nucleus, plastid	81.18	80.73
TraesCS5B01G012400.1	Wheat	cytosol	81.18	80.73
TraesCS5D01G019700.1	Wheat	nucleus	81.18	80.73
Zm00001d041243_P001	Maize	mitochondrion	80.06	79.17
KRH77189	Soybean	endoplasmic reticulum	60.96	75.09
KRH48807	Soybean	mitochondrion	30.34	72.97
AT5G09660.4	Thale cress	cytosol	74.16	72.73
HORVU5Hr1G002010.1	Barley	plastid	81.46	70.9
KXG24112	Sorghum	plastid	81.46	65.02
KRH55117	Soybean	mitochondrion	62.08	64.06
KRH26205	Soybean	mitochondrion	61.52	63.48
CDX69893	Canola	cytosol	85.96	55.43
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	58.43	50.86
KRH56907	Soybean	endoplasmic reticulum	57.58	49.64

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100799793	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	EMBL:ACUP02004645
EMBL:BT098751	UniProt:C6TM03	EnsemblPlantsGene:GLYMA_07G185400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	EnsemblPlants:KRH49884	ProteinID:KRH49884
ProteinID:KRH49884.1	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0001B1715B	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:35301465..35304784

Molecular Weight (calculated)

37464.5 Da

IEP (calculated)

8.464

GRAVY (calculated)

0.108

Length

356 amino acids

Sequence
(BLAST)

001: MEARAGANQR IARISAHLQP PNFQEGSDVL LKSAECRAKG GAPGFKVAIL GAAGGIGQPL SLLMKMNPLV SVLHLYDVVN TPGVTADVSH MDTGAVVRGF
101: LGQQQLESAL TGMDLVIIPA GVPRKPGMTR DDLFKINAGI VRTLCEGIAK SCPNAIVNLI SNPVNSTVAI AAEVFKKAGT YDPKRLLGVT TLDVVRANTF
201: VAEVLGVDPR EVDVPVVGGH AGVTILPLLS QVKPRSSFTA EETEYLTNRI QNGGTEVVEA KAGTGSATLS MAYAAAKFAG ACLRGLKGEA GVVECAFVDS
301: QVTELPFFAT KVRLGRAGAE EVYQLGPLNE YERIGLEKAK RELAGSIQKG VEFIRK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.