CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
YLoc:	cytosol

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH11018
KRH21268
KRH23029
KRH24840
KRH29844
KRH56371
KRH62568

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	KRH11018	AT1G29260.1	24879895
AT2G22780.1	KRH21268	AT1G29260.1	24879895
AT2G22780.1	KRH10294	AT3G46090.1	17259181
AT2G22780.1	KRH23029	AT3G46090.1	17259181
AT2G22780.1	KRH24840	AT3G46090.1	17259181
AT2G22780.1	KRH29844	AT3G46090.1	17259181
AT2G22780.1	KRH56371	AT5G56290.1	24879895
AT2G22780.1	KRH62568	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77189	Soybean	endoplasmic reticulum	80.41	41.18
KRH28298	Soybean	endoplasmic reticulum, nucleus	83.11	34.84
Solyc02g063490.2.1	Tomato	plastid	77.03	32.39
PGSC0003DMT400026930	Potato	plastid	77.03	32.39
Os12t0632700-01	Rice	extracellular, nucleus, plastid	74.32	30.9
CDX89514	Canola	cytosol	72.97	30.59
CDY25631	Canola	plastid	72.97	30.59
Zm00001d041243_P001	Maize	mitochondrion	74.32	30.56
AT2G22780.1	Thale cress	cytosol	72.97	30.51
KRH49884	Soybean	endoplasmic reticulum, nucleus	72.97	30.34
KRH42019	Soybean	nucleus	72.97	30.34
Bra030204.1-P	Field mustard	cytosol	72.3	30.31
TraesCS5A01G014300.1	Wheat	nucleus, plastid	72.97	30.17
TraesCS5B01G012400.1	Wheat	cytosol	72.3	29.89
TraesCS5D01G019700.1	Wheat	nucleus	72.3	29.89
GSMUA_Achr4P01380_001	Banana	plasma membrane	70.95	29.49
HORVU5Hr1G002010.1	Barley	plastid	72.97	26.41
VIT_00s0373g00040.t01	Wine grape	peroxisome	75.68	25.81
KRH26205	Soybean	mitochondrion	60.14	25.8
KRH55117	Soybean	mitochondrion	60.14	25.8
CDY43430	Canola	cytosol	29.73	25.43
KXG24112	Sorghum	plastid	74.32	24.66
CDY17513	Canola	cytosol	23.65	22.44
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	57.43	20.78
KRH56907	Soybean	endoplasmic reticulum	56.76	20.34
CDY34030	Canola	mitochondrion	21.62	11.47

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:35.1	UniProt:A0A0R0J220	EMBL:ACUP02004286
EnsemblPlantsGene:GLYMA_07G113600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	EnsemblPlants:KRH48807	ProteinID:KRH48807
ProteinID:KRH48807.1	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF34	MetaCyc:PWY-1622
MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327	UniParc:UPI0006ED691F	:

Description

hypothetical protein

Coordinates

chr7:-:11829748..11830194

Molecular Weight (calculated)

15950.0 Da

IEP (calculated)

8.643

GRAVY (calculated)

0.524

Length

148 amino acids

Sequence
(BLAST)

001: LKDALIGMDL VIIPAGVPHK HGLTKDDLFN INVGIVKTLC EAIAKCCPKA IVNVLSNPVN STVLITAEVF KRVGTYDPKR LLGVTMLDVV RANMFVAEVL
101: GVDLRYVDVP IIGGHVGITI LPLLSQIKPP CSFTLKRSEY PSSTILTS

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.