Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, peroxisome
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 plastid: 21417358
msms PMID: 21417358 doi
DR Demartini, R Jain, G Agrawal, JJ Thelen
Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90175
CDX99799
CDY11941
CDY20736
CDY36789
CDY43325
CDY49390
CDY50786
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G22780.1 CDX90175 AT1G29260.1 24879895
AT2G22780.1 CDX99799 AT1G29260.1 24879895
AT2G22780.1 CDY43325 AT1G29260.1 24879895
AT2G22780.1 CDY50786 AT1G29260.1 24879895
AT2G22780.1 CDY11941 AT5G56290.1 24879895
AT2G22780.1 CDY20736 AT5G56290.1 24879895
AT2G22780.1 CDY36789 AT5G56290.1 24879895
AT2G22780.1 CDY49390 AT5G56290.1 24879895
AT2G22780.1 CDY66434 AT5G56290.1 24879895
AT2G22780.1 CDY66435 AT5G56290.1 24879895
AT2G22780.1 CDY67858 AT5G56290.1 24879895
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030204.1-P Field mustard cytosol 99.72 99.72
CDX89514 Canola cytosol 98.87 98.87
AT2G22780.1 Thale cress cytosol 94.33 94.07
PGSC0003DMT400026930 Potato plastid 83.57 83.81
Solyc02g063490.2.1 Tomato plastid 83.57 83.81
CDY43430 Canola cytosol 40.51 82.66
CDY17513 Canola cytosol 35.69 80.77
KRH28298 Soybean endoplasmic reticulum, nucleus 80.17 80.17
CDX85803 Canola plastid 81.3 80.17
CDY44813 Canola cytosol 81.3 80.17
CDY21594 Canola cytosol 81.02 79.89
Os12t0632700-01 Rice extracellular, nucleus, plastid 79.89 79.21
GSMUA_Achr4P01380_001 Banana plasma membrane 79.6 78.93
TraesCS5A01G014300.1 Wheat nucleus, plastid 78.75 77.65
TraesCS5D01G019700.1 Wheat nucleus 78.47 77.37
KRH77189 Soybean endoplasmic reticulum 63.17 77.16
Zm00001d041243_P001 Maize mitochondrion 78.47 76.94
TraesCS5B01G012400.1 Wheat cytosol 77.9 76.82
KRH48807 Soybean mitochondrion 30.59 72.97
VIT_00s0373g00040.t01 Wine grape peroxisome 83.85 68.2
HORVU5Hr1G002010.1 Barley plastid 78.75 67.97
CDY55845 Canola mitochondrion 60.91 63.05
CDY25868 Canola mitochondrion 60.91 63.05
CDY59402 Canola mitochondrion 60.34 62.46
CDY24107 Canola mitochondrion 60.06 62.35
KXG24112 Sorghum plastid 78.75 62.33
CDY02518 Canola mitochondrion 60.06 62.17
CDY26002 Canola mitochondrion 60.06 61.81
CDY55842 Canola mitochondrion 22.95 60.0
CDY21789 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 24.93 55.35
CDX69893 Canola cytosol 80.74 51.63
CDY61271 Canola plastid 58.07 51.25
CDY34030 Canola mitochondrion 36.83 46.59
CDY47402 Canola plastid 58.36 43.83
CDX98040 Canola cytosol 18.13 38.32
CDY19424 Canola cytosol 17.28 35.88
CDX77861 Canola plastid 25.21 31.12
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:5.7.3.6.5GO:A0A078GJU5UniProt:A0A078GJU5
EnsemblPlants:CDY25631ProteinID:CDY25631ProteinID:CDY25631.1GO:GO:0003674GO:GO:0003824GO:GO:0005975
GO:GO:0006091GO:GO:0006099GO:GO:0006108GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00032916001InterPro:IPR015955InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_ASInterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102
ScanProsite:PS00068PANTHER:PTHR11540PANTHER:PTHR11540:SF21MetaCyc:PWY-1622MetaCyc:PWY-5392MetaCyc:PWY-561
MetaCyc:PWY-5690MetaCyc:PWY-5913MetaCyc:PWY-6728MetaCyc:PWY-6969MetaCyc:PWY-7115MetaCyc:PWY-7383
SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01772UniParc:UPI0004EED915::
Description
BnaA04g13230DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078GJU5]
Coordinates
chrLK032177:-:426210..429167
Molecular Weight (calculated)
37086.5 Da
IEP (calculated)
8.050
GRAVY (calculated)
0.178
Length
353 amino acids
Sequence
(BLAST)
001: MDANQRIARI SAHLNPPNLD QIGSGSGLEG VGCRAKGGSP GFKVAILGAA GGIGQPLAML MKMNPLVSLL HLYDVANAPG VTADISHMDT SAIVRGFLGQ
101: SQLEEALTGM DLVIIPAGVP RKPGMTRDDL FKINAGIVRT LSEAIAKCCP KAIVNIISNP VNSTVPIAAE VFKKAGTFDP KKLMGVTMLD VVRANTFVAE
201: VMSLDPREVD VPVVGGHAGV TILPLLSQVK PPCSFTQKEI EYLTDRIQNG GTEVVEAKAG AGSATLSMAY AAVKFADACL KGLRGDANIV ECAFVASHVT
301: ELPFFASKVR LGRCGVDEVY GLGPLNEYER MGLEKAKKEL EGSIAKGVTF VKK
Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)
001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK
Arabidopsis Description
PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.