CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55845	Canola	mitochondrion	99.12	99.12
Bra030951.1-P	Field mustard	mitochondrion	97.95	97.95
CDY02518	Canola	mitochondrion	97.95	97.95
CDY59402	Canola	mitochondrion	97.95	97.95
CDY26002	Canola	mitochondrion	97.36	96.79
AT1G53240.1	Thale cress	mitochondrion	96.77	96.77
CDY24107	Canola	mitochondrion	96.48	96.76
CDY55842	Canola	mitochondrion	33.72	85.19
KRH55117	Soybean	mitochondrion	85.92	84.93
KRH26205	Soybean	mitochondrion	85.34	84.35
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	82.7	82.46
Os01t0649100-01	Rice	mitochondrion	82.11	82.35
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	81.52	81.76
PGSC0003DMT400039788	Potato	mitochondrion	81.52	81.52
TraesCS1A01G412900.1	Wheat	plastid	81.23	81.23
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	81.23	81.23
TraesCS1D01G420500.1	Wheat	mitochondrion	81.23	81.23
PGSC0003DMT400032266	Potato	cytosol, extracellular	82.11	80.92
Os05t0574400-01	Rice	extracellular	80.65	80.88
EES19985	Sorghum	mitochondrion	80.65	80.88
HORVU3Hr1G058460.1	Barley	mitochondrion	80.65	80.65
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	82.11	80.46
Solyc07g062650.2.1	Tomato	extracellular	81.52	80.35
TraesCS3D01G236200.1	Wheat	mitochondrion	80.06	80.29
VIT_19s0014g01640.t01	Wine grape	mitochondrion	81.52	80.12
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	79.77	80.0
GSMUA_Achr4P08580_001	Banana	mitochondrion	81.23	79.83
Zm00001d039089_P001	Maize	mitochondrion	79.47	79.71
TraesCS3A01G234800.2	Wheat	mitochondrion	78.59	78.82
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	80.06	74.18
CDY25631	Canola	plastid	63.05	60.91
CDX89514	Canola	cytosol	62.76	60.62
CDY21594	Canola	cytosol	61.58	58.66
CDX85803	Canola	plastid	61.58	58.66
CDY44813	Canola	cytosol	61.58	58.66
KXG33002	Sorghum	cytosol, nucleus, peroxisome	81.23	57.47
HORVU1Hr1G090710.1	Barley	cytosol	64.22	54.89
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.63	52.83
CDY43430	Canola	cytosol	25.81	50.87
CDY61271	Canola	plastid	59.53	50.75
CDY17513	Canola	cytosol	22.58	49.36
CDY47402	Canola	plastid	59.82	43.4
CDX98040	Canola	cytosol	19.35	39.52
CDX69893	Canola	cytosol	62.17	38.41
CDY34030	Canola	mitochondrion	30.21	36.92
CDY19424	Canola	cytosol	18.18	36.47
CDX77861	Canola	plastid	26.1	31.12
HORVU1Hr1G090720.1	Barley	peroxisome	17.89	28.91

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:A0A078GMM3	UniProt:A0A078GMM3
EnsemblPlants:CDY25868	ProteinID:CDY25868	ProteinID:CDY25868.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00033313001	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0004EDAEB0	SEG:seg	:

Description

BnaA05g14590DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078GMM3]

Coordinates

chrLK032181:+:360590..362881

Molecular Weight (calculated)

35731.4 Da

IEP (calculated)

8.581

GRAVY (calculated)

0.144

Length

341 amino acids

Sequence
(BLAST)

001: MFRSMLVRSS SSAKQSLIRR NLSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC SAIAKYCPHA LVNMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RAKTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSGDVLTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVVEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.