Factsheet for PGSC0003DMT400032266

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 3
mitochondrion 9

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062650.2.1	Tomato	extracellular	98.84	98.84
PGSC0003DMT400039788	Potato	mitochondrion	88.15	89.44
KRH55117	Soybean	mitochondrion	85.55	85.8
EES19985	Sorghum	mitochondrion	83.53	85.0
KRH26205	Soybean	mitochondrion	84.68	84.93
GSMUA_Achr4P08580_001	Banana	mitochondrion	84.39	84.15
Zm00001d039089_P001	Maize	mitochondrion	82.66	84.12
Os05t0574400-01	Rice	extracellular	82.37	83.82
Os01t0649100-01	Rice	mitochondrion	82.08	83.53
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	83.81	83.33
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	81.79	83.24
Bra038112.1-P	Field mustard	mitochondrion	74.57	82.69
AT3G15020.1	Thale cress	mitochondrion	81.21	82.4
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	81.21	82.4
CDY59402	Canola	mitochondrion	80.92	82.11
AT1G53240.1	Thale cress	mitochondrion	80.92	82.11
TraesCS1D01G420500.1	Wheat	mitochondrion	80.92	82.11
CDY25868	Canola	mitochondrion	80.92	82.11
Bra039662.1-P	Field mustard	mitochondrion	80.64	82.06
CDY24107	Canola	mitochondrion	80.64	82.06
Bra030951.1-P	Field mustard	mitochondrion	80.64	81.82
TraesCS1A01G412900.1	Wheat	plastid	80.64	81.82
CDY02518	Canola	mitochondrion	80.64	81.82
CDY55845	Canola	mitochondrion	80.64	81.82
CDY26002	Canola	mitochondrion	80.64	81.34
VIT_19s0014g01640.t01	Wine grape	mitochondrion	81.21	80.98
HORVU3Hr1G058460.1	Barley	mitochondrion	78.9	80.06
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	78.32	79.71
TraesCS3D01G236200.1	Wheat	mitochondrion	78.32	79.71
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	83.53	78.53
TraesCS3A01G234800.2	Wheat	mitochondrion	77.17	78.53
CDY55842	Canola	mitochondrion	28.9	74.07
PGSC0003DMT400013106	Potato	cytosol	63.01	61.06
PGSC0003DMT400026930	Potato	plastid	61.85	60.8
KXG33002	Sorghum	cytosol, nucleus, peroxisome	82.37	59.13
HORVU1Hr1G090710.1	Barley	cytosol	64.16	55.64
PGSC0003DMT400065411	Potato	plastid	59.25	49.76
PGSC0003DMT400030247	Potato	plastid	59.25	49.76
PGSC0003DMT400050235	Potato	plastid	58.96	49.51
HORVU1Hr1G090720.1	Barley	peroxisome	15.9	26.07

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EMBL:AJ488941	EMBL:AJ488942
EMBL:AJ488943	EMBL:AJ488945	ProteinID:CAD33240	ProteinID:CAD33240.1	ProteinID:CAD33241	ProteinID:CAD33241.1
ProteinID:CAD33242	ProteinID:CAD33242.1	ProteinID:CAD33244	ProteinID:CAD33244.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
UniProt:M1AX44	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
EnsemblPlantsGene:PGSC0003DMG400012395	PGSC:PGSC0003DMG400012395	EnsemblPlants:PGSC0003DMT400032266	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF44	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000296823F	:

Description

Malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400012395]

Coordinates

chr7:+:52792508..52795768

Molecular Weight (calculated)

36124.9 Da

IEP (calculated)

9.291

GRAVY (calculated)

0.138

Length

346 amino acids

Sequence
(BLAST)

001: MRTSMLKSIV RRSSTAGASY VSRRGFASGS APERKVAVLG AAGGIGQPLS LLMKLNPLVS SLSLYDIAGT PGVAADVSHI NTRSEVVGFA GEEQLGKALE
101: GADIVIIPAG VPRKPGMTRD DLFNINAGIV KSLCTAIAKY CPNALVNMIS NPVNSTVPIA AEVFKKAGTY DEKKLFGVTM LDVVRAKTFY AGKAKVNVAE
201: VNLPVVGGHA GITILPLFSQ ATPKANLSNE EIVALTKRTQ DGGTEVVEAK AGKGSATLSM AYAGAIFADA CLKGLNGVPD VVECAFVQSN VTELPFFASK
301: VRLGKNGVEE VLGLGPLNDY EKQGLEALKP ELLSSIEKGI KFAKEN

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.