Factsheet for VIT_19s0014g01640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01000.t01	Wine grape	mitochondrion	86.17	84.94
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	84.15	83.91
Os01t0649100-01	Rice	mitochondrion	81.27	82.94
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	81.27	82.46
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	80.4	82.06
Os05t0574400-01	Rice	extracellular	80.4	82.06
Bra038112.1-P	Field mustard	mitochondrion	73.78	82.05
GSMUA_Achr4P08580_001	Banana	mitochondrion	81.84	81.84
CDY02518	Canola	mitochondrion	80.4	81.82
PGSC0003DMT400039788	Potato	mitochondrion	80.4	81.82
CDY59402	Canola	mitochondrion	80.4	81.82
Solyc07g062650.2.1	Tomato	extracellular	81.56	81.79
Bra030951.1-P	Field mustard	mitochondrion	80.12	81.52
CDY25868	Canola	mitochondrion	80.12	81.52
CDY55845	Canola	mitochondrion	80.12	81.52
AT3G15020.1	Thale cress	mitochondrion	79.83	81.23
PGSC0003DMT400032266	Potato	cytosol, extracellular	80.98	81.21
EES19985	Sorghum	mitochondrion	79.54	81.18
KRH55117	Soybean	mitochondrion	80.69	81.16
Zm00001d039089_P001	Maize	mitochondrion	79.25	80.88
CDY26002	Canola	mitochondrion	79.83	80.76
Bra039662.1-P	Field mustard	mitochondrion	78.96	80.59
CDY24107	Canola	mitochondrion	78.96	80.59
AT1G53240.1	Thale cress	mitochondrion	78.96	80.35
KRH26205	Soybean	mitochondrion	79.83	80.29
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	77.81	79.18
TraesCS1D01G420500.1	Wheat	mitochondrion	77.81	79.18
TraesCS1A01G412900.1	Wheat	plastid	77.81	79.18
HORVU3Hr1G058460.1	Barley	mitochondrion	76.37	77.71
TraesCS3D01G236200.1	Wheat	mitochondrion	75.79	77.35
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	75.5	77.06
TraesCS3A01G234800.2	Wheat	mitochondrion	74.35	75.88
CDY55842	Canola	mitochondrion	29.39	75.56
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	79.83	75.27
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	61.67	60.11
KXG33002	Sorghum	cytosol, nucleus, peroxisome	80.4	57.88
HORVU1Hr1G090710.1	Barley	cytosol	62.82	54.64
VIT_00s0373g00040.t01	Wine grape	peroxisome	62.25	49.77
VIT_14s0108g00870.t01	Wine grape	plastid	61.1	49.53
VIT_17s0000g06270.t01	Wine grape	plastid	58.5	49.15
HORVU1Hr1G090720.1	Barley	peroxisome	14.7	24.17

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100253724	wikigene:100253724	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10
EMBL:AM453488	ProteinID:CAN83064	ProteinID:CAN83064.1	ProteinID:CBI20215	ProteinID:CBI20215.3	UniProt:E0CSB6
EMBL:FN595229	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH
EntrezGene:LOC100253724	wikigene:LOC100253724	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGR:TC54982	TIGRFAMs:TIGR01772
UniParc:UPI00015C81FF	ArrayExpress:VIT_19s0014g01640	EnsemblPlantsGene:VIT_19s0014g01640	EnsemblPlants:VIT_19s0014g01640.t01	unigene:Vvi.1249	RefSeq:XP_002285356
RefSeq:XP_002285356.1	SEG:seg	:	:	:	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:E0CSB6]

Coordinates

chr19:+:1727979..1733475

Molecular Weight (calculated)

36372.1 Da

IEP (calculated)

8.559

GRAVY (calculated)

0.108

Length

347 amino acids

Sequence
(BLAST)

001: MAMRSVRSAL RSGSSSSPSH FLRRCYCSES VPERKVTILG AAGGIGQPLA LLMKINPLVS NLALYDIAGT PGVAADVSHV NTISQVAGFM GEDQLGKALE
101: GSDVVIIPAG VPRKPGMTRD DLFNINAGIV KSLCIAIAKY CPNALVNVIS NPVNSTVPIA AEVFKKAGTF DEKKLFGVTT LDVVRAKTFY AAKAKVPVSE
201: VNVPVVGGHA GITILPLFSQ TTPKSNNLSD EDIQALTKRT QDGGTEVVEA KAGKGSATLS MAYAGAIFAD ACLKGLNGVP EVVECSYVQS SITELPFFSS
301: KVRLGKNGVE EVLGLGPLSD YEKEGLEKLK PDLKASIEKG IKFAAQS

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.