Factsheet for VIT_10s0003g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0649100-01	Rice	mitochondrion	84.09	87.06
VIT_19s0014g01640.t01	Wine grape	mitochondrion	84.94	86.17
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	82.1	85.0
Os05t0574400-01	Rice	extracellular	82.1	85.0
TraesCS1D01G420500.1	Wheat	mitochondrion	82.1	84.75
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	82.1	84.75
TraesCS1A01G412900.1	Wheat	plastid	81.82	84.46
EES19985	Sorghum	mitochondrion	81.53	84.41
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	83.24	84.2
Zm00001d039089_P001	Maize	mitochondrion	80.97	83.82
GSMUA_Achr4P08580_001	Banana	mitochondrion	81.53	82.71
HORVU3Hr1G058460.1	Barley	mitochondrion	78.98	81.52
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	78.12	80.88
TraesCS3D01G236200.1	Wheat	mitochondrion	78.12	80.88
TraesCS3A01G234800.2	Wheat	mitochondrion	76.99	79.71
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	82.39	78.8
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	60.8	60.11
KXG33002	Sorghum	cytosol, nucleus, peroxisome	81.53	59.54
HORVU1Hr1G090710.1	Barley	cytosol	64.49	56.89
VIT_00s0373g00040.t01	Wine grape	peroxisome	60.51	49.08
VIT_14s0108g00870.t01	Wine grape	plastid	59.38	48.83
VIT_17s0000g06270.t01	Wine grape	plastid	57.1	48.67
HORVU1Hr1G090720.1	Barley	peroxisome	16.76	27.96

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100232859	wikigene:100232859	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10
ProteinID:AAF69802	ProteinID:AAF69802.1	EMBL:AF195869	ProteinID:CCB55666	ProteinID:CCB55666.1	UniProt:F6HM78
EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615
GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	EntrezGene:MDH	wikigene:MDH	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGR:TC60439	TIGRFAMs:TIGR01772
UniParc:UPI00015CBEEA	ArrayExpress:VIT_10s0003g01000	EnsemblPlantsGene:VIT_10s0003g01000	EnsemblPlants:VIT_10s0003g01000.t01	unigene:Vvi.82	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HM78]

Coordinates

chr10:+:2369419..2374322

Molecular Weight (calculated)

36804.5 Da

IEP (calculated)

8.879

GRAVY (calculated)

0.084

Length

352 amino acids

Sequence
(BLAST)

001: MKASLFRSAE AALRRVSSPS ASSHLLRRSY CVESKPERKV AVLGAAGGIG QPLALLMKLN PLVSSLSLYD IAGTPGVAAD VSHINTRSQV AGYMGDDQLG
101: QALEGADLVI IPAGVPRKPG MTRDDLFNIN AGIVKSLCTA IAKYCPNALV NMISNPVNST VPIAAEVFKK AGTYDEKKLF GVTTLDVVRA KTFYAGKAKV
201: PVAEANVPVV GGHAGITILP LFSQATPKSN NLSDEDIVAL TKRTQDGGTE VVEAKAGKGS ATLSMAYAGA VFADACLKGL NGVPDVVECS FVQSTIVPDL
301: PYFASKVKLG KNGVEEVLGL GPLSDYEKQG LESLKHELKA SIEKGIKFAT QS

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.