Factsheet for GSMUA_AchrUn_randomP11210_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, unclear

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08580_001	Banana	mitochondrion	89.94	90.2
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	84.77	86.26
Os05t0574400-01	Rice	extracellular	83.91	85.88
PGSC0003DMT400039788	Potato	mitochondrion	83.62	85.34
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	83.33	85.29
Os01t0649100-01	Rice	mitochondrion	83.05	85.0
VIT_19s0014g01640.t01	Wine grape	mitochondrion	83.91	84.15
Solyc07g062650.2.1	Tomato	extracellular	83.62	84.1
PGSC0003DMT400032266	Potato	cytosol, extracellular	83.33	83.81
Zm00001d039089_P001	Maize	mitochondrion	81.61	83.53
VIT_10s0003g01000.t01	Wine grape	mitochondrion	84.2	83.24
Bra038112.1-P	Field mustard	mitochondrion	74.43	83.01
EES19985	Sorghum	mitochondrion	81.03	82.94
CDY59402	Canola	mitochondrion	81.03	82.7
Bra030951.1-P	Field mustard	mitochondrion	80.75	82.4
CDY02518	Canola	mitochondrion	80.75	82.4
KRH55117	Soybean	mitochondrion	81.61	82.32
CDY25868	Canola	mitochondrion	80.46	82.11
TraesCS1D01G420500.1	Wheat	mitochondrion	80.46	82.11
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	80.46	82.11
TraesCS1A01G412900.1	Wheat	plastid	80.46	82.11
AT1G53240.1	Thale cress	mitochondrion	80.17	81.82
KRH26205	Soybean	mitochondrion	81.03	81.74
CDY26002	Canola	mitochondrion	80.46	81.63
CDY55845	Canola	mitochondrion	79.89	81.52
Bra039662.1-P	Field mustard	mitochondrion	79.31	81.18
CDY24107	Canola	mitochondrion	79.31	81.18
AT3G15020.1	Thale cress	mitochondrion	79.31	80.94
HORVU3Hr1G058460.1	Barley	mitochondrion	77.87	79.47
TraesCS3D01G236200.1	Wheat	mitochondrion	77.01	78.82
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	76.72	78.53
TraesCS3A01G234800.2	Wheat	mitochondrion	75.57	77.35
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	81.03	76.63
CDY55842	Canola	mitochondrion	29.02	74.81
GSMUA_Achr5P02000_001	Banana	unclear	62.93	61.52
GSMUA_Achr4P01380_001	Banana	plasma membrane	61.49	60.11
KXG33002	Sorghum	cytosol, nucleus, peroxisome	83.05	59.96
HORVU1Hr1G090710.1	Barley	cytosol	63.51	55.39
GSMUA_Achr5P23320_001	Banana	peroxisome	46.84	51.91
GSMUA_Achr6P02650_001	Banana	plastid	57.47	48.08
GSMUA_Achr7P11540_001	Banana	plastid	56.9	47.6
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	46.84	43.58
HORVU1Hr1G090720.1	Barley	peroxisome	16.67	27.49

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	EnsemblPlantsGene:GSMUA_AchrUn_randomG11210_001	EnsemblPlants:GSMUA_AchrUn_randomP11210_001	EnsemblPlants:GSMUA_AchrUn_randomT11210_001	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0U880	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF45	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000295E966	SEG:seg

Description

Malate dehydrogenase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG11210_001]

Coordinates

chrchrUn_random:-:54111888..54116526

Molecular Weight (calculated)

36348.0 Da

IEP (calculated)

9.291

GRAVY (calculated)

0.081

Length

348 amino acids

Sequence
(BLAST)

001: MRSFVVRSIE SALRRRGAAS SNRRLFSSDS APERKVAILG AAGGIGQPLA LLMKLNPLVS NLALYDIAGT PGVAADVGHI NTRAQVAGYV GEEQLGKALE
101: GSDVVIIPAG VPRKPGMTRD DLFNINAGIV KSLCTAIAKY CPSAVVNMIS NPVNSTVPIA SEVFKKAGTY DEKKLFGVTT LDVVRAKTFY AGKAKVPVAD
201: VNVPVVGGHA GITILPLFSQ ATPASNDLAT EDIKALTKRT QDGGTEVVEA KAGKGSATLS MAYAGAIFAD ACLKGLNGVP DIVECSFVQS SITELPFFAS
301: KVRLGKNGVD QVLGLGPSLS DYEKEGLENL KPELKASIEK GIKFAKDN

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.