Factsheet for AT1G53240.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 14690504

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25868	Canola	mitochondrion	96.77	96.77
CDY59402	Canola	mitochondrion	96.48	96.48
Bra030951.1-P	Field mustard	mitochondrion	96.48	96.48
CDY02518	Canola	mitochondrion	96.48	96.48
Bra038112.1-P	Field mustard	mitochondrion	88.27	96.47
CDY55845	Canola	mitochondrion	95.89	95.89
CDY26002	Canola	mitochondrion	95.89	95.34
CDY24107	Canola	mitochondrion	94.72	95.0
Bra039662.1-P	Field mustard	mitochondrion	94.43	94.71
AT3G15020.1	Thale cress	mitochondrion	88.86	88.86
KRH55117	Soybean	mitochondrion	84.75	83.77
CDY55842	Canola	mitochondrion	33.14	83.7
KRH26205	Soybean	mitochondrion	84.16	83.19
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	82.4	82.16
PGSC0003DMT400039788	Potato	mitochondrion	81.52	81.52
Os01t0649100-01	Rice	mitochondrion	81.23	81.47
HORVU3Hr1G058460.1	Barley	mitochondrion	81.23	81.23
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	80.94	81.18
PGSC0003DMT400032266	Potato	cytosol, extracellular	82.11	80.92
EES19985	Sorghum	mitochondrion	80.35	80.59
Os05t0574400-01	Rice	extracellular	80.35	80.59
TraesCS1D01G420500.1	Wheat	mitochondrion	80.35	80.35
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	80.35	80.35
TraesCS1A01G412900.1	Wheat	plastid	80.35	80.35
Solyc07g062650.2.1	Tomato	extracellular	81.52	80.35
TraesCS3D01G236200.1	Wheat	mitochondrion	80.06	80.29
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	81.82	80.17
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	79.77	80.0
GSMUA_Achr4P08580_001	Banana	mitochondrion	80.94	79.54
Zm00001d039089_P001	Maize	mitochondrion	79.18	79.41
VIT_19s0014g01640.t01	Wine grape	mitochondrion	80.35	78.96
TraesCS3A01G234800.2	Wheat	mitochondrion	78.59	78.82
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	79.77	73.91
AT2G22780.1	Thale cress	cytosol	61.29	59.04
KXG33002	Sorghum	cytosol, nucleus, peroxisome	80.35	56.85
HORVU1Hr1G090710.1	Barley	cytosol	64.22	54.89
AT3G47520.1	Thale cress	plastid	59.82	50.62
AT5G09660.4	Thale cress	cytosol	53.08	49.86
AT3G53910.1	Thale cress	cytosol	10.26	32.41
HORVU1Hr1G090720.1	Barley	peroxisome	17.89	28.91

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EntrezGene:841757	ProteinID:AAF69549.1
ProteinID:AEE32910.1	EMBL:AF324670	EMBL:AF339684	EMBL:AJ131205	ArrayExpress:AT1G53240	EnsemblPlantsGene:AT1G53240
RefSeq:AT1G53240	TAIR:AT1G53240	RefSeq:AT1G53240-TAIR-G	EnsemblPlants:AT1G53240.1	TAIR:AT1G53240.1	EMBL:AY062580
EMBL:AY087304	EMBL:AY128783	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0030312	GO:GO:0042742
GO:GO:0046686	GO:GO:0048046	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_564625.1
PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001170
PO:PO:0001185	PO:PO:0004507	PO:PO:0005020	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007131	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	UniProt:Q9ZP06
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00000014E8	Symbol:mMDH1	SEG:seg

Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]

Coordinates

chr1:-:19854615..19857146

Molecular Weight (calculated)

35806.5 Da

IEP (calculated)

8.582

GRAVY (calculated)

0.165

Length

341 amino acids

Sequence
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.