CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039089_P001	Maize	mitochondrion	96.76	96.76
Os05t0574400-01	Rice	extracellular	91.47	91.47
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	96.18	88.86
TraesCS1D01G420500.1	Wheat	mitochondrion	88.24	87.98
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	88.24	87.98
TraesCS1A01G412900.1	Wheat	plastid	87.94	87.68
Solyc07g062650.2.1	Tomato	extracellular	85.29	83.81
PGSC0003DMT400032266	Potato	cytosol, extracellular	85.0	83.53
KRH55117	Soybean	mitochondrion	83.82	82.61
PGSC0003DMT400039788	Potato	mitochondrion	82.35	82.11
KRH26205	Soybean	mitochondrion	83.24	82.03
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	82.06	81.58
GSMUA_Achr4P08580_001	Banana	mitochondrion	83.24	81.56
VIT_10s0003g01000.t01	Wine grape	mitochondrion	84.41	81.53
Bra038112.1-P	Field mustard	mitochondrion	74.41	81.09
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	82.94	81.03
CDY59402	Canola	mitochondrion	81.18	80.94
Bra030951.1-P	Field mustard	mitochondrion	81.18	80.94
CDY02518	Canola	mitochondrion	80.88	80.65
CDY25868	Canola	mitochondrion	80.88	80.65
CDY55845	Canola	mitochondrion	80.59	80.35
AT1G53240.1	Thale cress	mitochondrion	80.59	80.35
CDY24107	Canola	mitochondrion	80.29	80.29
AT3G15020.1	Thale cress	mitochondrion	80.29	80.06
Bra039662.1-P	Field mustard	mitochondrion	79.71	79.71
CDY26002	Canola	mitochondrion	80.29	79.59
VIT_19s0014g01640.t01	Wine grape	mitochondrion	81.18	79.54
CDY55842	Canola	mitochondrion	30.59	77.04
KXG33002	Sorghum	cytosol, nucleus, peroxisome	90.29	63.69
HORVU1Hr1G090710.1	Barley	cytosol	69.71	59.4
OQU90313	Sorghum	plastid	60.0	52.58
OQU80513	Sorghum	plastid	60.29	52.03
KXG24112	Sorghum	plastid	65.88	50.22
KXG37460	Sorghum	mitochondrion	65.0	50.0
HORVU1Hr1G090720.1	Barley	peroxisome	16.76	27.01

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EntrezGene:8083786	UniProt:C5YW21
EnsemblPlants:EES19985	ProteinID:EES19985	ProteinID:EES19985.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114
InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS
InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF45	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	EnsemblPlantsGene:SORBI_3009G240700
SUPFAM:SSF51735	SUPFAM:SSF56327	unigene:Sbi.14528	TIGRFAMs:TIGR01772	UniParc:UPI0001A89340	RefSeq:XP_002441555.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:57799754..57804273

Molecular Weight (calculated)

35349.8 Da

IEP (calculated)

8.308

GRAVY (calculated)

0.108

Length

340 amino acids

Sequence
(BLAST)

001: MRPSLLKSSA ELLRRSRGYA SAANPERKVA ILGAAGGIGQ PLSLLMKLNP LVSSLSLYDI AGTPGVAADV SHINSPALVK GFMGDDQLGE ALEGSDVVII
101: PAGVPRKPGM TRDDLFNINA GIVKGLCTAI AKHCPNALVN MISNPVNSTV PIAAEVFKKA GTYDKKKLFG VTTLDVVRAK TFYAGKAGVP VTEVNVPVVG
201: GHAGITILPL FSQATPASNS LSQEDIEALT KRTQDGGTEV VEAKAGKGSA TLSMAYAGAV FADACLKGLN GVPDVVECSF VQSTVTELPF FASKVRLGKN
301: GVEEVLGLGE LNDFEKKGLE NLKGELMSSI EKGVKFAHSN

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.