Factsheet for Solyc07g062650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
mitochondrion 9

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
extracellular: 22892874
plastid: 22908117
plastid: 26371478
unclear: 26455813
mitochondrion: 26471654
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26471654 doi

O López-Vidal, D Camejo, F Rivera-Cabrera, M Konigsberg, JM Villa-Hernández, JA Mendoza-Espinoza, LJ Pérez-Flores, F Sevilla, A Jiménez, F Díaz de León-Sánchez

Centro de Edafología y Biología Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, 30100 Murcia, Spain., Cátedra Amelia Sámano Bishop, Universidad Autónoma Metropolitana, Colegio de Ciencias y Humanidades, Plantel Casa Libertad Universidad Autónoma de la Ciudad de México, Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: fdls@xanum.uam.mx., Department of Health Sciences, Universidad Autónoma Metropolitana, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 Iztapalapa, México, D.F., Mexico. Electronic address: omarlopezvidal@yahoo.com.mx.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032266	Potato	cytosol, extracellular	98.84	98.84
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	87.57	88.6
KRH55117	Soybean	mitochondrion	85.55	85.8
EES19985	Sorghum	mitochondrion	83.81	85.29
KRH26205	Soybean	mitochondrion	84.68	84.93
Zm00001d039089_P001	Maize	mitochondrion	82.95	84.41
GSMUA_Achr4P08580_001	Banana	mitochondrion	84.39	84.15
Os05t0574400-01	Rice	extracellular	82.66	84.12
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	82.37	83.82
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	84.1	83.62
Os01t0649100-01	Rice	mitochondrion	82.08	83.53
Bra038112.1-P	Field mustard	mitochondrion	74.57	82.69
AT3G15020.1	Thale cress	mitochondrion	81.21	82.4
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	81.21	82.4
TraesCS1D01G420500.1	Wheat	mitochondrion	80.92	82.11
TraesCS1A01G412900.1	Wheat	plastid	80.64	81.82
VIT_19s0014g01640.t01	Wine grape	mitochondrion	81.79	81.56
AT1G53240.1	Thale cress	mitochondrion	80.35	81.52
CDY59402	Canola	mitochondrion	80.35	81.52
CDY25868	Canola	mitochondrion	80.35	81.52
CDY02518	Canola	mitochondrion	80.06	81.23
CDY55845	Canola	mitochondrion	80.06	81.23
Bra030951.1-P	Field mustard	mitochondrion	80.06	81.23
CDY24107	Canola	mitochondrion	79.77	81.18
Bra039662.1-P	Field mustard	mitochondrion	79.77	81.18
CDY26002	Canola	mitochondrion	80.06	80.76
HORVU3Hr1G058460.1	Barley	mitochondrion	78.9	80.06
TraesCS3D01G236200.1	Wheat	mitochondrion	78.32	79.71
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	78.32	79.71
TraesCS3A01G234800.2	Wheat	mitochondrion	77.17	78.53
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	83.24	78.26
CDY55842	Canola	mitochondrion	28.9	74.07
Solyc09g091070.1.1	Tomato	nucleus	52.89	61.41
Solyc02g063490.2.1	Tomato	plastid	62.14	61.08
KXG33002	Sorghum	cytosol, nucleus, peroxisome	82.95	59.54
HORVU1Hr1G090710.1	Barley	cytosol	64.16	55.64
Solyc03g115990.1.1	Tomato	plastid	59.25	49.76
HORVU1Hr1G090720.1	Barley	peroxisome	15.9	26.07

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	UniProt:K4CGU8	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	SUPFAM:SSF51735	SUPFAM:SSF56327
EnsemblPlantsGene:Solyc07g062650.2	EnsemblPlants:Solyc07g062650.2.1	TIGRFAMs:TIGR01772	UniParc:UPI000276B847	:	:

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4CGU8]

Coordinates

chr7:+:65338277..65341542

Molecular Weight (calculated)

36083.8 Da

IEP (calculated)

8.838

GRAVY (calculated)

0.131

Length

346 amino acids

Sequence
(BLAST)

001: MRTSMLKSIV RRSSTAGASY VSRRGFASGS APERKVAVLG AAGGIGQPLS LLMKLNPLVS SLSLYDIAGT PGVAADVSHI NTRSEVAGFA GEEQLGQALE
101: GADVVIIPAG VPRKPGMTRD DLFNINAGIV KSLCTAIAKY CPNALVNMIS NPVNSTVPIA AEVFKKAGTY DEKKLFGVTM LDVVRAKTFY AGKAKVNVAE
201: VNLPVVGGHA GITILPLFSQ ATPKANLSDE EIVALTKRTQ DGGTEVVEAK AGKGSATLSM AYAGAIFADA CLKGLNGVPD VVECAFVQSN VTELPFFASK
301: VRLGKNGVEE VLGLGPLNDY EKQGLEALKP ELLSSIEKGI KFAKEN

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.