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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • plastid 3
  • mitochondrion 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:cytosol
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr5P23320_001 Banana peroxisome 79.87 75.8
Bra019504.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 39.6 74.21
CDY21789 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 39.6 74.21
Os08t0434300-01 Rice plastid 87.58 73.31
PGSC0003DMT400065411 Potato plastid 97.32 70.39
PGSC0003DMT400030247 Potato plastid 97.32 70.39
OQU80513 Sorghum plastid 86.91 65.74
Zm00001d050409_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 87.25 65.49
Os01t0829800-01 Rice plastid 86.91 65.4
VIT_17s0000g06270.t01 Wine grape plastid 90.27 65.13
TraesCS7B01G289400.1 Wheat plastid 85.91 64.97
TraesCS1D01G351500.1 Wheat golgi, plastid 86.58 64.82
TraesCS1A01G348500.1 Wheat plastid 86.58 64.82
TraesCS7A01G386600.1 Wheat plastid 85.57 64.72
Zm00001d032187_P001 Maize plastid 85.23 64.47
TraesCS1B01G363100.1 Wheat plastid 85.91 64.32
Solyc03g115990.1.1 Tomato plastid 88.93 64.32
AT3G47520.1 Thale cress plastid 86.91 64.27
HORVU1Hr1G081550.1 Barley plastid 85.91 64.16
KRH03482 Soybean endoplasmic reticulum, mitochondrion, nucleus, plastid 87.92 64.06
KRH56907 Soybean endoplasmic reticulum 88.59 63.92
CDY61271 Canola plastid 85.23 63.5
GSMUA_Achr6P02650_001 Banana plastid 88.59 63.46
Bra018137.1-P Field mustard plastid 84.9 62.94
GSMUA_Achr7P11540_001 Banana plastid 86.58 62.02
TraesCS7D01G383100.1 Wheat plastid, vacuole 85.57 61.45
GSMUA_Achr10P... Banana endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 71.48 56.95
HORVU7Hr1G091760.2 Barley mitochondrion 86.91 55.82
CDY47402 Canola plastid 85.57 54.26
Solyc12g014180.1.1 Tomato mitochondrion, unclear 60.74 52.92
Solyc07g062650.2.1 Tomato extracellular 61.41 52.89
Solyc02g063490.2.1 Tomato plastid 60.74 51.42
AT3G53910.1 Thale cress cytosol 16.11 44.44
CDX77861 Canola plastid 40.94 42.66
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:23.1.3.4.3Gene3D:3.40.50.720Gene3D:3.90.110.10GO:GO:0003674GO:GO:0003824
GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060
GO:GO:0055114InterPro:IPR015955UniProt:K4CWD3InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866
PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR11540PANTHER:PTHR11540:SF46SUPFAM:SSF51735SUPFAM:SSF56327
EnsemblPlantsGene:Solyc09g091070.1EnsemblPlants:Solyc09g091070.1.1TIGRFAMs:TIGR01772UniParc:UPI000276B1AB::
Description
Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4CWD3]
Coordinates
chr9:+:70406057..70406953
Molecular Weight (calculated)
31803.2 Da
IEP (calculated)
5.189
GRAVY (calculated)
0.105
Length
298 amino acids
Sequence
(BLAST)
001: MSPLVSSLHL YDIANVKGVA ADLSHCNTPA QVFDFTGASE LANSLKGIDV VVIPAGVPRK PGMTRDDLFN INANIVKSLV EAVADNCPDA FIHIISNPVN
101: STVPIAAEVL KQKGVYDPKK LFGVTTLDVV RANTFVAQKK NLKLIDVDVP VIGGHAGITI LPLLSKTRPS TTFTDEEVQE LTVRIQNAGT EVVEAKAGAG
201: SATLSMAYAA ARFVESSLRA LDGDADVYEC SYVQSDLTEL PFFASRVKLG RNGIEALISS DLRGLTEYEQ KALEALKIEL KASIEKGIAY AQKQTVSA
Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)
001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN
Arabidopsis Description
MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.