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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • peroxisome 1
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome, secretory
Any Predictor:mitochondrion, peroxisome, secretory
BaCelLo:secretory
MultiLoc:peroxisome
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019504.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 98.74 98.74
Solyc09g091070.1.1 Tomato nucleus 74.21 39.6
Os08t0434300-01 Rice plastid 74.21 33.15
AT3G47520.1 Thale cress plastid 81.13 32.01
CDY61271 Canola plastid 79.87 31.75
GSMUA_Achr5P23320_001 Banana peroxisome 62.26 31.53
Zm00001d050409_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 74.21 29.72
Zm00001d032187_P001 Maize plastid 73.58 29.7
Os01t0829800-01 Rice plastid 73.58 29.55
OQU80513 Sorghum plastid 72.96 29.44
Solyc03g115990.1.1 Tomato plastid 76.1 29.37
PGSC0003DMT400050235 Potato plastid 76.1 29.37
KRH03482 Soybean endoplasmic reticulum, mitochondrion, nucleus, plastid 75.47 29.34
KRH56907 Soybean endoplasmic reticulum 76.1 29.3
TraesCS7B01G289400.1 Wheat plastid 71.7 28.93
TraesCS1D01G351500.1 Wheat golgi, plastid 71.7 28.64
TraesCS1B01G363100.1 Wheat plastid 71.7 28.64
TraesCS1A01G348500.1 Wheat plastid 71.7 28.64
PGSC0003DMT400065411 Potato plastid 74.21 28.64
PGSC0003DMT400030247 Potato plastid 74.21 28.64
TraesCS7A01G386600.1 Wheat plastid 70.44 28.43
HORVU1Hr1G081550.1 Barley plastid 71.07 28.32
VIT_17s0000g06270.t01 Wine grape plastid 72.96 28.09
GSMUA_Achr7P11540_001 Banana plastid 72.96 27.88
VIT_14s0108g00870.t01 Wine grape plastid 74.84 27.8
GSMUA_Achr6P02650_001 Banana plastid 72.33 27.64
TraesCS7D01G383100.1 Wheat plastid, vacuole 70.44 26.99
CDY47402 Canola plastid 79.25 26.81
CDY59402 Canola mitochondrion 54.09 25.22
CDY25631 Canola plastid 55.35 24.93
CDX89514 Canola cytosol 55.35 24.93
CDY02518 Canola mitochondrion 53.46 24.93
CDY24107 Canola mitochondrion 52.83 24.71
CDY55845 Canola mitochondrion 52.83 24.63
CDY25868 Canola mitochondrion 52.83 24.63
HORVU7Hr1G091760.2 Barley mitochondrion 71.7 24.57
CDY26002 Canola mitochondrion 52.83 24.49
CDX85803 Canola plastid 54.72 24.3
CDY44813 Canola cytosol 54.72 24.3
CDY21594 Canola cytosol 54.72 24.3
CDY43430 Canola cytosol 23.9 21.97
CDX98040 Canola cytosol 21.38 20.36
CDY19424 Canola cytosol 21.38 20.0
GSMUA_Achr10P... Banana endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 44.03 18.72
CDX77861 Canola plastid 30.82 17.13
CDY17513 Canola cytosol 16.35 16.67
CDX69893 Canola cytosol 55.35 15.94
CDY55842 Canola mitochondrion 12.58 14.81
CDY34030 Canola mitochondrion 20.75 11.83
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:35.1GO:A0A078G8R7UniProt:A0A078G8R7
EnsemblPlants:CDY21789ProteinID:CDY21789ProteinID:CDY21789.1GO:GO:0000003GO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0005773GO:GO:0005774GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108
GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008746GO:GO:0009409
GO:GO:0009507GO:GO:0009532GO:GO:0009536GO:GO:0009570GO:GO:0009628GO:GO:0009719
GO:GO:0009735GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009941GO:GO:0009987
GO:GO:0010319GO:GO:0016020GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0030060
GO:GO:0048046GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00016325001InterPro:IPR015955InterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866ScanProsite:PS00068
PANTHER:PTHR11540PANTHER:PTHR11540:SF46MetaCyc:PWY-1622MetaCyc:PWY-5392MetaCyc:PWY-561MetaCyc:PWY-5690
MetaCyc:PWY-5913MetaCyc:PWY-6728MetaCyc:PWY-6969MetaCyc:PWY-7115MetaCyc:PWY-7383SUPFAM:SSF51735
SUPFAM:SSF56327UniParc:UPI0004EF129B::::
Description
BnaA06g20580DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078G8R7]
Coordinates
chrLK032124:+:311765..312338
Molecular Weight (calculated)
17294.1 Da
IEP (calculated)
9.266
GRAVY (calculated)
0.100
Length
159 amino acids
Sequence
(BLAST)
001: MSHLVSTLHL YNIANVKRVV ADLSLCNTHS QVLAFTGPSE LADCLKDVNV MVIPAGVPRK HSMTRNTVNS TVPIAAQVLT KKGVYDPKKL FGVTTLDVVR
101: ANTFVSQKKK LKHIIVDVPV IGGHAGVTIL PIFSKTKPSA SLTDEEFQEL TVSDSECWN
Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)
001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN
Arabidopsis Description
MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.