Factsheet for PGSC0003DMT400050235

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115990.1.1	Tomato	plastid	99.03	99.03
PGSC0003DMT400065411	Potato	plastid	83.98	83.98
PGSC0003DMT400030247	Potato	plastid	83.98	83.98
VIT_17s0000g06270.t01	Wine grape	plastid	82.28	82.08
Os08t0434300-01	Rice	plastid	69.66	80.62
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	78.88	79.46
KRH56907	Soybean	endoplasmic reticulum	78.64	78.45
AT3G47520.1	Thale cress	plastid	75.0	76.67
Os01t0829800-01	Rice	plastid	73.3	76.26
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.37	76.1
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.37	76.1
CDY61271	Canola	plastid	73.79	76.0
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	73.06	75.82
TraesCS1A01G348500.1	Wheat	plastid	72.57	75.13
TraesCS1B01G363100.1	Wheat	plastid	72.57	75.13
OQU80513	Sorghum	plastid	71.6	74.87
Bra018137.1-P	Field mustard	plastid	72.57	74.38
TraesCS7B01G289400.1	Wheat	plastid	71.12	74.37
GSMUA_Achr7P11540_001	Banana	plastid	74.76	74.04
HORVU1Hr1G081550.1	Barley	plastid	71.6	73.93
GSMUA_Achr5P23320_001	Banana	peroxisome	56.31	73.89
TraesCS1D01G351500.1	Wheat	golgi, plastid	71.36	73.87
TraesCS7A01G386600.1	Wheat	plastid	70.63	73.86
Zm00001d032187_P001	Maize	plastid	70.39	73.6
GSMUA_Achr6P02650_001	Banana	plastid	74.27	73.56
TraesCS7D01G383100.1	Wheat	plastid, vacuole	71.36	70.84
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	60.92	67.11
CDY47402	Canola	plastid	73.54	64.47
HORVU7Hr1G091760.2	Barley	mitochondrion	72.09	64.01
PGSC0003DMT400039788	Potato	mitochondrion	50.0	60.41
PGSC0003DMT400032266	Potato	cytosol, extracellular	49.51	58.96
PGSC0003DMT400026930	Potato	plastid	50.0	58.52
PGSC0003DMT400013106	Potato	cytosol	48.54	56.02
AT3G53910.1	Thale cress	cytosol	12.86	49.07
CDX77861	Canola	plastid	31.55	45.45

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:102598930	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M1BPZ5
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	EnsemblPlantsGene:PGSC0003DMG400019511
PGSC:PGSC0003DMG400019511	EnsemblPlants:PGSC0003DMT400050235	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	SUPFAM:SSF51735
SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0002962C96	RefSeq:XP_006364593.1	SEG:seg	:

Description

NAD-malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400019511]

Coordinates

chr3:+:55807758..55812183

Molecular Weight (calculated)

43277.9 Da

IEP (calculated)

8.029

GRAVY (calculated)

0.048

Length

412 amino acids

Sequence
(BLAST)

001: MAATSATTLS VGSTTSLGCK GSSISQSKAF GVKFNSKNNI RSFSGLKAAT TVSCESESSF LGKESLAALK QSITPKAQKE NRGYVNCVQP QASYKVAILG
101: ASGGIGQPLA LLVKMSPLVS ELNLYDIANV KGVAADLSHC NTPSQVSDFT GASELANCLK GVNVVVIPAG VPRKPGMTRD DLFNINANIV KTLVEAVADN
201: CPDAFIHIIS NPVNSTVPIA AEVLKRKGVY DPKKLFGVTT LDVVRANTFV AQKKNLRLID VDVPVVGGHA GITILPLLSK TKPSTTFTDE EVQELTVRIQ
301: NAGTEVVEAK AGAGSATLSM AYAAARFVES SLRALDGDSD VYECAFVQSD VSELPFFASR IKIGKNGVEA LISSDLQGLS EYEQKALDAL KPELKSSIEK
401: GTGFVQKEPV AA

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.