CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018137.1-P	Field mustard	plastid	98.5	98.01
Solyc09g091070.1.1	Tomato	nucleus	63.5	85.23
CDY47402	Canola	plastid	97.25	82.77
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	31.75	79.87
Os08t0434300-01	Rice	plastid	70.5	79.21
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	77.0	75.31
KRH56907	Soybean	endoplasmic reticulum	77.0	74.58
VIT_17s0000g06270.t01	Wine grape	plastid	76.25	73.85
Solyc03g115990.1.1	Tomato	plastid	76.0	73.79
PGSC0003DMT400050235	Potato	plastid	76.0	73.79
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	73.0	73.55
GSMUA_Achr5P23320_001	Banana	peroxisome	57.5	73.25
TraesCS7B01G289400.1	Wheat	plastid	72.0	73.1
OQU80513	Sorghum	plastid	71.5	72.59
PGSC0003DMT400065411	Potato	plastid	74.75	72.57
PGSC0003DMT400030247	Potato	plastid	74.75	72.57
TraesCS7A01G386600.1	Wheat	plastid	71.25	72.33
Os01t0829800-01	Rice	plastid	71.5	72.22
TraesCS1D01G351500.1	Wheat	golgi, plastid	71.5	71.86
TraesCS1A01G348500.1	Wheat	plastid	71.5	71.86
TraesCS1B01G363100.1	Wheat	plastid	71.25	71.61
HORVU1Hr1G081550.1	Barley	plastid	71.25	71.43
Zm00001d032187_P001	Maize	plastid	70.25	71.32
VIT_14s0108g00870.t01	Wine grape	plastid	75.75	70.79
GSMUA_Achr6P02650_001	Banana	plastid	73.25	70.43
GSMUA_Achr7P11540_001	Banana	plastid	72.75	69.95
TraesCS7D01G383100.1	Wheat	plastid, vacuole	71.75	69.16
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	59.0	63.1
HORVU7Hr1G091760.2	Barley	mitochondrion	71.5	61.64
CDY59402	Canola	mitochondrion	51.25	60.12
CDY24107	Canola	mitochondrion	51.0	60.0
CDY02518	Canola	mitochondrion	51.0	59.82
CDY26002	Canola	mitochondrion	51.25	59.77
CDY55845	Canola	mitochondrion	50.75	59.53
CDY25868	Canola	mitochondrion	50.75	59.53
CDY55842	Canola	mitochondrion	20.0	59.26
CDY21594	Canola	cytosol	52.5	58.66
CDX85803	Canola	plastid	52.25	58.38
CDY44813	Canola	cytosol	52.25	58.38
CDX89514	Canola	cytosol	51.5	58.36
CDY25631	Canola	plastid	51.25	58.07
CDX98040	Canola	cytosol	21.0	50.3
CDX77861	Canola	plastid	34.75	48.6
CDY43430	Canola	cytosol	21.0	48.55
CDY17513	Canola	cytosol	18.25	46.79
CDY19424	Canola	cytosol	19.5	45.88
AT3G53910.1	Thale cress	cytosol	12.0	44.44
CDX69893	Canola	cytosol	52.25	37.86
CDY34030	Canola	mitochondrion	22.25	31.9

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:A0A078J8R8	UniProt:A0A078J8R8
EnsemblPlants:CDY61271	ProteinID:CDY61271	ProteinID:CDY61271.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00033625001
InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46
MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728
MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
UniParc:UPI0004EDBB28	SEG:seg	:	:	:	:

Description

BnaA06g38600DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078J8R8]

Coordinates

chrLK033977:+:19817..21574

Molecular Weight (calculated)

42118.5 Da

IEP (calculated)

8.574

GRAVY (calculated)

0.066

Length

400 amino acids

Sequence
(BLAST)

001: MAATSAASSI SIGSTVPRAS SSLPQSRAQA VNFNYSLPRF TALRSSTLLS GPDSSSFAKS LRGSVTKSQS TDTKPYGLNI NASYKVAVLG AAGGIGQPLS
101: LLIKMSPLVS TLHLYDIANV KGVAADLSHC NTPSQVRDFT GPAELADCLK DVNVVVIPAG VPRKPGMTRD DLFNINAGIV KTLVEAVADN CPNAFIHIIS
201: NPVNSTVPIA AEVLRKKGVY DPKKLFGVTT LDVVRANTFV SQKKNLKLID VDVPVIGGHA GITILPLLSK TKPSVSFTDE EIEKLTVRIQ NAGTEVVDAK
301: AGAGSATLSM AYAAARFVES SLRALDGDGD VYECSFVDST LTDLPFFASR IKIGRNGVEA VIESDLQGLT EYEHKALEAL KPELKASIEK GVAFANKPAN

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.