CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85803	Canola	plastid	95.81	95.81
CDY44813	Canola	cytosol	95.81	95.81
KRH42019	Soybean	nucleus	86.31	86.8
KRH49884	Soybean	endoplasmic reticulum, nucleus	85.2	85.67
GSMUA_Achr4P01380_001	Banana	plasma membrane	82.68	83.15
AT5G09660.4	Thale cress	cytosol	82.4	81.27
CDY25631	Canola	plastid	79.89	81.02
CDX89514	Canola	cytosol	79.61	80.74
Os12t0632700-01	Rice	extracellular, nucleus, plastid	79.61	80.06
TraesCS5D01G019700.1	Wheat	nucleus	79.33	79.33
TraesCS5A01G014300.1	Wheat	nucleus, plastid	79.05	79.05
TraesCS5B01G012400.1	Wheat	cytosol	78.21	78.21
Zm00001d041243_P001	Maize	mitochondrion	78.49	78.06
HORVU5Hr1G002010.1	Barley	plastid	78.77	68.95
CDY43430	Canola	cytosol	33.24	68.79
CDY17513	Canola	cytosol	29.89	68.59
CDX69893	Canola	cytosol	98.32	63.77
KXG24112	Sorghum	plastid	78.49	63.0
CDY25868	Canola	mitochondrion	58.66	61.58
CDY55845	Canola	mitochondrion	58.66	61.58
CDY59402	Canola	mitochondrion	58.66	61.58
CDY24107	Canola	mitochondrion	58.38	61.47
CDY02518	Canola	mitochondrion	58.38	61.29
CDY26002	Canola	mitochondrion	58.38	60.93
CDY55842	Canola	mitochondrion	22.63	60.0
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.3	54.72
CDY61271	Canola	plastid	58.66	52.5
CDY47402	Canola	plastid	59.22	45.11
CDY34030	Canola	mitochondrion	32.68	41.94
CDX98040	Canola	cytosol	18.44	39.52
CDY19424	Canola	cytosol	17.88	37.65
CDX77861	Canola	plastid	25.7	32.17

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:A0A078G873	UniProt:A0A078G873
EnsemblPlants:CDY21594	ProteinID:CDY21594	ProteinID:CDY21594.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00016061001	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0004EE0298	:	:

Description

BnaC09g46980DMalate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078G873]

Coordinates

chrLK032122:-:396196..398381

Molecular Weight (calculated)

37788.9 Da

IEP (calculated)

7.820

GRAVY (calculated)

0.099

Length

358 amino acids

Sequence
(BLAST)

001: MEFRGDASQR IAMISAHLQP SFTSQMEEKN SVMGRENCRG KGGKAGFKVA ILGAAGGIGQ SLSLLMKMNP LVSLLHLYDV VNAPGVTADV SHMDTGAVVR
101: GFLGAKQLED ALTGMDLVII PAGVPRKPGM TRDDLFKINA GIVKTLCEGV AKCCPNAIVN LISNPVNSTV AIAAEVFKKA GTYDPKKLLG VTTLDVARAN
201: TFVAEVLGLD PREVDVPVVG GHAGVTILPL LSQVKPPSSF TPSETEYLTN RIQNGGTEVV EAKAGAGSAT LSMAYAAAKF ADACLRGLRG DANVVECSFV
301: ASQVTELPFF ATKVRLGRTG AEEVYQLGPL NEYERVVLEK AKEELAGSIH KGVDFIRK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.