CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90175
CDX99799
CDY11941
CDY20736
CDY36789
CDY43325
CDY49390
CDY50786
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	CDX90175	AT1G29260.1	24879895
AT2G22780.1	CDX99799	AT1G29260.1	24879895
AT2G22780.1	CDY43325	AT1G29260.1	24879895
AT2G22780.1	CDY50786	AT1G29260.1	24879895
AT2G22780.1	CDY11941	AT5G56290.1	24879895
AT2G22780.1	CDY20736	AT5G56290.1	24879895
AT2G22780.1	CDY36789	AT5G56290.1	24879895
AT2G22780.1	CDY49390	AT5G56290.1	24879895
AT2G22780.1	CDY66434	AT5G56290.1	24879895
AT2G22780.1	CDY66435	AT5G56290.1	24879895
AT2G22780.1	CDY67858	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17513	Canola	cytosol	29.03	51.92
CDY43430	Canola	cytosol	30.11	48.55
CDY55842	Canola	mitochondrion	22.58	46.67
CDY25631	Canola	plastid	46.59	36.83
CDX89514	Canola	cytosol	46.24	36.54
AT2G22780.1	Thale cress	cytosol	44.44	35.03
KRH77189	Soybean	endoplasmic reticulum	35.84	34.6
Solyc02g063490.2.1	Tomato	plastid	41.94	33.24
PGSC0003DMT400026930	Potato	plastid	41.94	33.24
CDY21594	Canola	cytosol	41.94	32.68
CDX85803	Canola	plastid	41.22	32.12
CDY44813	Canola	cytosol	41.22	32.12
Os12t0632700-01	Rice	extracellular, nucleus, plastid	40.86	32.02
KRH28298	Soybean	endoplasmic reticulum, nucleus	40.5	32.01
TraesCS5A01G014300.1	Wheat	nucleus, plastid	40.86	31.84
TraesCS5D01G019700.1	Wheat	nucleus	40.86	31.84
GSMUA_Achr4P01380_001	Banana	plasma membrane	40.5	31.74
TraesCS5B01G012400.1	Wheat	cytosol	40.14	31.28
Zm00001d041243_P001	Maize	mitochondrion	40.14	31.11
CDY25868	Canola	mitochondrion	36.92	30.21
CDY24107	Canola	mitochondrion	36.56	30.0
CDY59402	Canola	mitochondrion	36.56	29.91
CDY02518	Canola	mitochondrion	36.56	29.91
CDY55845	Canola	mitochondrion	36.56	29.91
CDY26002	Canola	mitochondrion	36.56	29.74
CDX98040	Canola	cytosol	17.56	29.34
HORVU5Hr1G002010.1	Barley	plastid	40.5	27.63
VIT_00s0373g00040.t01	Wine grape	peroxisome	40.86	26.27
CDY19424	Canola	cytosol	15.77	25.88
KXG24112	Sorghum	plastid	40.5	25.34
CDY61271	Canola	plastid	31.9	22.25
KRH48807	Soybean	mitochondrion	11.47	21.62
CDX69893	Canola	cytosol	42.29	21.38
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	11.83	20.75
CDY47402	Canola	plastid	31.54	18.72
CDX77861	Canola	plastid	18.28	17.83

Protein Annotations

Gene3D:3.90.110.10	MapMan:35.1	GO:A0A078H658	UniProt:A0A078H658	EnsemblPlants:CDY34030	ProteinID:CDY34030
ProteinID:CDY34030.1	InterPro:DUF1295	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016616	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00055898001	InterPro:IPR015955	InterPro:Lactate/malate_DH_C
InterPro:Lactate_DH/Glyco_Ohase_4_C	PFAM:PF02866	PFAM:PF06966	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF56327
UniParc:UPI0004EEDA86	SEG:seg	:	:	:	:

Description

BnaC03g27850DBnaC03g27850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H658]

Coordinates

chrLK032326:+:287729..291405

Molecular Weight (calculated)

31162.8 Da

IEP (calculated)

10.054

GRAVY (calculated)

-0.214

Length

279 amino acids

Sequence
(BLAST)

001: MASKDVRLLL NTWRHQKPPH PPVHIAQKIN DDMRNRIAIL LRCQNGQWDE LRVRWTSSCT LPDRKWTLYA RGRSQISRRK MAAATSLTSC GFCSLCSPLQ
101: AVCAEKGFRL KVEAIADEQN NSKKIKEDGD VGQWKYPPHP NYFGELLLLW YALINTHSFL DPREVVVPVV GGHAGVTILP LLSQAKAGAG SATLSMAYAA
201: VKFADACLKG LRGDANIVEC AFVASHVTEL PFFASKVRLG RCGVDEVYGL GPLNEYGGWD WRRQRKSLKG VLRITFVKK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.