Factsheet for Os12t0632700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

plastid 3
peroxisome 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 15276429
extracellular: 23159799
plastid: 27992503

msms PMID: 15276429 doi

MM Khan, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0245100-01
Os08t0500100-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	Os02t0245100-01	AT1G29260.1	24879895
AT2G22780.1	Os08t0500100-02	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G019700.1	Wheat	nucleus	91.85	91.34
TraesCS5A01G014300.1	Wheat	nucleus, plastid	91.57	91.06
TraesCS5B01G012400.1	Wheat	cytosol	91.29	90.78
Zm00001d041243_P001	Maize	mitochondrion	91.57	90.56
GSMUA_Achr5P02000_001	Banana	unclear	88.76	88.76
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	85.96	85.96
Os03t0773800-01	Rice	plastid	81.74	82.2
KRH28298	Soybean	endoplasmic reticulum, nucleus	81.46	82.15
PGSC0003DMT400026930	Potato	plastid	81.18	82.1
Solyc02g063490.2.1	Tomato	plastid	81.18	82.1
KRH49884	Soybean	endoplasmic reticulum, nucleus	82.02	82.02
KRH42019	Soybean	nucleus	81.74	81.74
PGSC0003DMT400013106	Potato	cytosol	81.74	81.51
AT2G22780.1	Thale cress	cytosol	79.78	80.23
CDY44813	Canola	cytosol	80.34	79.89
CDX85803	Canola	plastid	80.34	79.89
Bra028624.1-P	Field mustard	cytosol	80.34	79.89
CDY25631	Canola	plastid	79.21	79.89
Bra030204.1-P	Field mustard	cytosol	79.21	79.89
HORVU5Hr1G002010.1	Barley	plastid	91.57	79.71
CDY21594	Canola	cytosol	80.06	79.61
Bra009397.1-P	Field mustard	cytosol	80.06	79.61
CDX89514	Canola	cytosol	78.09	78.75
KRH77189	Soybean	endoplasmic reticulum	63.2	77.85
KXG24112	Sorghum	plastid	93.82	74.89
KRH48807	Soybean	mitochondrion	30.9	74.32
AT5G09660.4	Thale cress	cytosol	71.63	70.25
VIT_00s0373g00040.t01	Wine grape	peroxisome	83.99	68.89
CDY43430	Canola	cytosol	32.87	67.63
CDY17513	Canola	cytosol	29.21	66.67
Os05t0574400-01	Rice	extracellular	62.36	65.29
Os01t0649100-01	Rice	mitochondrion	61.8	64.71
Os08t0434300-01	Rice	plastid	57.3	57.3
Os07t0630800-03	Rice	plastid	60.11	52.97
Os01t0829800-01	Rice	plastid	57.58	51.77
CDX69893	Canola	cytosol	80.06	51.63
CDY34030	Canola	mitochondrion	32.02	40.86

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EntrezGene:4352871	MapMan:5.7.3.6.5	ProteinID:ABA99938.2
ProteinID:ABA99939.2	EMBL:AK061793	EMBL:AK065955	EMBL:AP008218	ProteinID:BAT18226.1	EMBL:D85763
ProteinID:EEE53658.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0005975	GO:GO:0006091	GO:GO:0006097	GO:GO:0006099
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009514	GO:GO:0009987	GO:GO:0016491
GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955
InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os12g0632700	EnsemblPlants:Os12t0632700-01	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	UniProt:Q42972	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01772	UniParc:UPI000012EE17	RefSeq:XP_015620524.1	SEG:seg	:	:

Description

Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37). (Os12t0632700-01)

Coordinates

chr12:-:27094649..27099336

Molecular Weight (calculated)

37387.6 Da

IEP (calculated)

7.987

GRAVY (calculated)

0.181

Length

356 amino acids

Sequence
(BLAST)

001: MEDAAAAARR MERLASHLRP PASQMEESPL LRGSNCRAKG AAPGFKVAIL GASGGIGQPL ALLMKMNPLV SVLHLYDVVN TPGVTADISH MNTGAVVRGF
101: LGQPQLENAL TGMDLVIIPA GVPRKPGMTR DDLFNINAGI VRTLCEGIAK CCPNAIVNVI SNPVNSTVPI AAEVFKKAGT YDPKRLLGVT TLDVVRANTF
201: VAEVLGLDPR DVNVPVIGGH AGVTILPLLS QVNPPCSFTS EEISYLTTRI QNGGTEVVEA KAGAGSATLS MAYAASKFAD ACLRGLRGDA GIVECSFVAS
301: QVTELPFFAS KVRLGRCGIE EILSLGPLNE FERAGLEKAK KELAESIQKG VAFINK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.