Factsheet for Os08t0434300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
extracellular: 25047395
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091070.1.1	Tomato	nucleus	73.31	87.58
OQU80513	Sorghum	plastid	94.38	85.28
Os01t0829800-01	Rice	plastid	94.1	84.6
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	93.54	83.88
Zm00001d032187_P001	Maize	plastid	92.42	83.5
TraesCS7A01G386600.1	Wheat	plastid	91.85	82.99
TraesCS1D01G351500.1	Wheat	golgi, plastid	92.7	82.91
TraesCS7B01G289400.1	Wheat	plastid	91.57	82.74
TraesCS1B01G363100.1	Wheat	plastid	92.42	82.66
HORVU1Hr1G081550.1	Barley	plastid	92.42	82.46
TraesCS1A01G348500.1	Wheat	plastid	92.13	82.41
TraesCS7D01G383100.1	Wheat	plastid, vacuole	91.57	78.55
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	33.43	74.84
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	33.15	74.21
GSMUA_Achr5P23320_001	Banana	peroxisome	65.45	74.2
GSMUA_Achr6P02650_001	Banana	plastid	85.11	72.84
PGSC0003DMT400065411	Potato	plastid	82.02	70.87
PGSC0003DMT400030247	Potato	plastid	82.02	70.87
CDY61271	Canola	plastid	79.21	70.5
HORVU7Hr1G091760.2	Barley	mitochondrion	91.85	70.47
AT3G47520.1	Thale cress	plastid	79.78	70.47
VIT_17s0000g06270.t01	Wine grape	plastid	81.18	69.98
GSMUA_Achr7P11540_001	Banana	plastid	81.46	69.71
PGSC0003DMT400050235	Potato	plastid	80.62	69.66
Solyc03g115990.1.1	Tomato	plastid	80.62	69.66
Bra018137.1-P	Field mustard	plastid	78.65	69.65
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	79.78	69.44
KRH56907	Soybean	endoplasmic reticulum	80.06	69.01
VIT_14s0108g00870.t01	Wine grape	plastid	82.58	68.69
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	67.13	63.9
Os07t0630800-03	Rice	plastid	69.1	60.89
Os01t0649100-01	Rice	mitochondrion	57.87	60.59
CDY47402	Canola	plastid	79.49	60.21
Os05t0574400-01	Rice	extracellular	57.02	59.71
Os12t0632700-01	Rice	extracellular, nucleus, plastid	57.3	57.3
Os03t0773800-01	Rice	plastid	55.62	55.93
CDX98040	Canola	cytosol	25.0	53.29
CDY19424	Canola	cytosol	23.6	49.41
CDX77861	Canola	plastid	34.83	43.36
AT3G53910.1	Thale cress	cytosol	12.92	42.59
Bra019790.1-P	Field mustard	plastid	40.45	36.83

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	ProteinID:BAF23792.1	ProteinID:BAT05582.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os08g0434300
EnsemblPlants:Os08t0434300-01	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF46	UniProt:Q0J5H3	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0000DD952E

Description

malate dehydrogenaseSimilar to Malate dehydrogenase precursor (EC 1.1.1.37). (Os08t0434300-01)

Coordinates

chr8:-:21054660..21056008

Molecular Weight (calculated)

37438.2 Da

IEP (calculated)

6.679

GRAVY (calculated)

0.146

Length

356 amino acids

Sequence
(BLAST)

001: GSSFLGRNAS LRASVAPRIV PKAKSGSQIS PEASYKVAVL GAAGGIGQPL GLLIKMSPLV SELHLYDIAN VKGVAADLSH CNTPSQVLDF TGPSELANCL
101: KGVDVVVIPA GVPRKPGMTR DDLFNINASI VKSLVEAVAD NCPEAFIHII SNPVNSTVPI AAEVLKQKGV YNPKKLFGVT TLDVVRANTF VAQKKNLKLI
201: DVDVPVVGGH AGITILPLLS KTMPSVTFTD EETEQLTKRI QNAGTEVVEA KAGAGSATLS MAYAAARFVE SSLRALAGDP DVYECTFVQS ELTELPFFAS
301: RVKLGKNGVE SIISADLEGV TEYEAKALEA LKSELKASIE KGIEFVHKQQ TAAASV

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.