Factsheet for Bra019790.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98040	Canola	cytosol	42.71	100.0
Os08t0434300-01	Rice	plastid	36.83	40.45
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	15.6	38.36
TraesCS7A01G386600.1	Wheat	plastid	38.36	38.07
TraesCS1A01G348500.1	Wheat	plastid	38.62	37.94
Os01t0829800-01	Rice	plastid	38.11	37.63
TraesCS7B01G289400.1	Wheat	plastid	37.85	37.56
OQU80513	Sorghum	plastid	37.85	37.56
Bra018137.1-P	Field mustard	plastid	38.62	37.56
TraesCS1D01G351500.1	Wheat	golgi, plastid	38.11	37.44
TraesCS1B01G363100.1	Wheat	plastid	38.11	37.44
HORVU1Hr1G081550.1	Barley	plastid	38.11	37.34
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	37.6	37.03
Zm00001d032187_P001	Maize	plastid	37.08	36.8
GSMUA_Achr5P23320_001	Banana	peroxisome	29.16	36.31
GSMUA_Achr6P02650_001	Banana	plastid	38.11	35.82
TraesCS7D01G383100.1	Wheat	plastid, vacuole	37.6	35.42
GSMUA_Achr7P11540_001	Banana	plastid	37.6	35.34
Bra030204.1-P	Field mustard	cytosol	29.67	32.86
Bra038112.1-P	Field mustard	mitochondrion	26.09	32.69
Bra028624.1-P	Field mustard	cytosol	29.92	32.68
Bra030951.1-P	Field mustard	mitochondrion	28.39	32.55
Bra039662.1-P	Field mustard	mitochondrion	28.13	32.35
HORVU7Hr1G091760.2	Barley	mitochondrion	38.36	32.33
Bra009397.1-P	Field mustard	cytosol	29.41	32.12
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	29.67	31.02

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:35.1	EnsemblPlantsGene:Bra019790	EnsemblPlants:Bra019790.1	EnsemblPlants:Bra019790.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016616	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
UniProt:M4DTE7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46
SUPFAM:SSF51735	SUPFAM:SSF56327	UniParc:UPI000253EC71	SEG:seg	:	:

Description

AT3G47520 (E=4e-068) MDH | MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor

Coordinates

chrA06:+:4395104..4396279

Molecular Weight (calculated)

42965.2 Da

IEP (calculated)

4.741

GRAVY (calculated)

0.006

Length

391 amino acids

Sequence
(BLAST)

001: MASSSFSVSY SSTTSSLPVF RTSQAVVFSS TSKFHTLTPR SSSYGKSLST KAHASSDNKK LYVENVNCSS KVTIIGSSLG IGPALSTSLK KSPLVSTLRF
101: YSMGSADPLK ACLDATLSQD QFSGLEETLK DTNVVVIDTP FPKAEGTLED NFIANAMMVR ACVEEVAGHC PDAFIIISNR MLNSIVPIMS AEVLKQRGVY
201: DPKKLFGLMT PETELARAFV AERFVLDVED VHVPVIGGHC SLTALPLFSK TTPHVILYKD DIILWTSEIT YSINNSSEYL DYFAGNPDRE YFEARGAERF
301: VLSLLRALGG ANDMFQCCFV ESNMFDDIPF FGSTVKLGKK GVEAIIETDL EGLTEYEVKS LKYLKEDLIE DIEKGIEFAK NNSEVYETIL V

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.