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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • mitochondrion 3
  • peroxisome 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome, secretory
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:secretory
EpiLoc:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:mitochondrion, plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21789 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 98.74 98.74
Solyc09g091070.1.1 Tomato nucleus 74.21 39.6
Os08t0434300-01 Rice plastid 74.84 33.43
AT3G47520.1 Thale cress plastid 81.13 32.01
Bra018137.1-P Field mustard plastid 79.87 31.59
GSMUA_Achr5P23320_001 Banana peroxisome 62.26 31.53
Zm00001d050409_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 74.84 29.97
Zm00001d032187_P001 Maize plastid 74.21 29.95
Os01t0829800-01 Rice plastid 74.21 29.8
OQU80513 Sorghum plastid 73.58 29.7
Solyc03g115990.1.1 Tomato plastid 76.1 29.37
PGSC0003DMT400050235 Potato plastid 76.1 29.37
KRH03482 Soybean endoplasmic reticulum, mitochondrion, nucleus, plastid 75.47 29.34
KRH56907 Soybean endoplasmic reticulum 76.1 29.3
TraesCS7B01G289400.1 Wheat plastid 72.33 29.19
TraesCS1D01G351500.1 Wheat golgi, plastid 72.33 28.89
TraesCS1B01G363100.1 Wheat plastid 72.33 28.89
TraesCS1A01G348500.1 Wheat plastid 72.33 28.89
TraesCS7A01G386600.1 Wheat plastid 71.07 28.68
PGSC0003DMT400065411 Potato plastid 74.21 28.64
PGSC0003DMT400030247 Potato plastid 74.21 28.64
HORVU1Hr1G081550.1 Barley plastid 71.7 28.57
VIT_17s0000g06270.t01 Wine grape plastid 72.96 28.09
GSMUA_Achr7P11540_001 Banana plastid 72.96 27.88
GSMUA_Achr6P02650_001 Banana plastid 72.96 27.88
VIT_14s0108g00870.t01 Wine grape plastid 74.84 27.8
TraesCS7D01G383100.1 Wheat plastid, vacuole 71.07 27.23
HORVU7Hr1G091760.2 Barley mitochondrion 72.33 24.78
Bra030204.1-P Field mustard cytosol 54.72 24.65
Bra030951.1-P Field mustard mitochondrion 52.83 24.63
Bra009397.1-P Field mustard cytosol 54.72 24.3
Bra039662.1-P Field mustard mitochondrion 51.57 24.12
Bra028624.1-P Field mustard cytosol 54.09 24.02
Bra038112.1-P Field mustard mitochondrion 44.03 22.44
GSMUA_Achr10P... Banana endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 44.03 18.72
Bra019790.1-P Field mustard plastid 38.36 15.6
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:35.1EnsemblPlantsGene:Bra019504EnsemblPlants:Bra019504.1
EnsemblPlants:Bra019504.1-PGO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005576
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005773GO:GO:0005774
GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108GO:GO:0006950GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0008746GO:GO:0009409GO:GO:0009507GO:GO:0009532
GO:GO:0009536GO:GO:0009570GO:GO:0009628GO:GO:0009719GO:GO:0009735GO:GO:0009790
GO:GO:0009791GO:GO:0009793GO:GO:0009941GO:GO:0009987GO:GO:0010319GO:GO:0016020
GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0030060GO:GO:0048046GO:GO:0055114
InterPro:IPR015955InterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CUniProt:M4DSL1InterPro:Malate_DH_AS
InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866ScanProsite:PS00068PANTHER:PTHR11540PANTHER:PTHR11540:SF46
SUPFAM:SSF51735SUPFAM:SSF56327UniParc:UPI000253F0DC:::
Description
AT3G47520 (E=1e-035) MDH | MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor
Coordinates
chrA06:-:12731662..12732235
Molecular Weight (calculated)
17280.1 Da
IEP (calculated)
9.266
GRAVY (calculated)
0.087
Length
159 amino acids
Sequence
(BLAST)
001: MSHLVSTLHL YNIANVKRVV ADLSLCNTHS QVLAFTGPSE LADCLKDVNV MVIPAGVPRK HSMTRNTVNS TVPIAAQVLT KKGVYDPKKL FGVTTLDVVR
101: ANTFVSQKKK LKHIIVDVPV IGGHAGITIL PIFSKTKPSA SLTDEEFQEL TASDSECWN
Best Arabidopsis Sequence Match ( AT3G15020.2 )
(BLAST)
001: MFRSMIVRSA SPVKQGLLRR GFASESVPDR KVVILGAAGG IGQPLSLLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS QVSGYMGDDD LGKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLS IAIAKYCPQA LVNMISNPVN STVPIAAEIF KKAGTYDEKK LFGVTTLDVV RARTFYAGKS DVNVAEVNVP
201: VVGGHAGITI LPLFSQASPQ ANLSDDLIRA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPNVVEC SFVQSTITEL PFFASKVRTG
301: KERSGGSARS RATLRL
Arabidopsis Description
mMDH2Malate dehydrogenase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.