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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:mitochondrion, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400050235 Potato plastid 99.03 99.03
Solyc09g091070.1.1 Tomato nucleus 64.32 88.93
VIT_17s0000g06270.t01 Wine grape plastid 82.04 81.84
Os08t0434300-01 Rice plastid 69.66 80.62
KRH03482 Soybean endoplasmic reticulum, mitochondrion, nucleus, plastid 78.64 79.22
KRH56907 Soybean endoplasmic reticulum 78.16 77.97
AT3G47520.1 Thale cress plastid 75.0 76.67
Os01t0829800-01 Rice plastid 73.3 76.26
Bra019504.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 29.37 76.1
CDY21789 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 29.37 76.1
Zm00001d050409_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 73.3 76.07
CDY61271 Canola plastid 73.79 76.0
TraesCS1B01G363100.1 Wheat plastid 72.33 74.87
TraesCS1A01G348500.1 Wheat plastid 72.33 74.87
OQU80513 Sorghum plastid 71.6 74.87
GSMUA_Achr7P11540_001 Banana plastid 75.24 74.52
Bra018137.1-P Field mustard plastid 72.57 74.38
TraesCS7B01G289400.1 Wheat plastid 70.87 74.11
GSMUA_Achr5P23320_001 Banana peroxisome 56.31 73.89
HORVU1Hr1G081550.1 Barley plastid 71.36 73.68
TraesCS1D01G351500.1 Wheat golgi, plastid 71.12 73.62
Zm00001d032187_P001 Maize plastid 70.39 73.6
TraesCS7A01G386600.1 Wheat plastid 70.39 73.6
GSMUA_Achr6P02650_001 Banana plastid 73.79 73.08
TraesCS7D01G383100.1 Wheat plastid, vacuole 71.12 70.6
GSMUA_Achr10P... Banana endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 60.92 67.11
CDY47402 Canola plastid 73.54 64.47
HORVU7Hr1G091760.2 Barley mitochondrion 71.84 63.79
Solyc12g014180.1.1 Tomato mitochondrion, unclear 49.76 59.94
Solyc07g062650.2.1 Tomato extracellular 49.76 59.25
Solyc02g063490.2.1 Tomato plastid 49.76 58.24
AT3G53910.1 Thale cress cytosol 12.62 48.15
CDX77861 Canola plastid 31.55 45.45
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:23.1.3.4.3Gene3D:3.40.50.720Gene3D:3.90.110.10GO:GO:0003674GO:GO:0003824
GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006108GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016491GO:GO:0016615GO:GO:0016616GO:GO:0030060GO:GO:0055114
InterPro:IPR015955UniProt:K4BLA1InterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_AS
InterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866ScanProsite:PS00068PANTHER:PTHR11540
PANTHER:PTHR11540:SF46SUPFAM:SSF51735SUPFAM:SSF56327EnsemblPlantsGene:Solyc03g115990.1EnsemblPlants:Solyc03g115990.1.1TIGRFAMs:TIGR01772
UniParc:UPI0002768D25SEG:seg::::
Description
No Description!
Coordinates
chr3:+:65541130..65542368
Molecular Weight (calculated)
43192.8 Da
IEP (calculated)
8.259
GRAVY (calculated)
0.064
Length
412 amino acids
Sequence
(BLAST)
001: MAATSATTLS VGSTTSLGCK GSSISQSKAF GVKFNSKNNI RSFSGLKAAT TVSCESESSF IGKESLAALK QSITPKAQKG NRGYVSCVQP QASYKVAILG
101: ASGGIGQPLA LLVKMSPLVS ELNLYDIANV KGVAADLSHC NTPSQVSDFT GASELANCLK GVNVVVIPAG VPRKPGMTRD DLFNINANIV KTLVEAVADN
201: CPDAFIHIIS NPVNSTVPIA AEVLKRKGVY DPKKLFGVTT LDVVRANTFV AQKKNLRLID VDVPVVGGHA GITILPLLSK TKPSTTFTDE EVQELTVRIQ
301: NAGTEVVEAK AGAGSATLSM AYAAARFVES SLRALDGDSD VYECAFVQSD ISELPFFASR IKIGKNGVEA LISSDLQGLS EYEQKALDAL KPELKSSIEK
401: GTGFVQKEPV AA
Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)
001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN
Arabidopsis Description
MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.