Factsheet for GSMUA_Achr6P02650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091070.1.1	Tomato	nucleus	63.46	88.59
Os08t0434300-01	Rice	plastid	72.84	85.11
Os01t0829800-01	Rice	plastid	75.72	79.55
GSMUA_Achr5P23320_001	Banana	peroxisome	59.86	79.3
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	75.48	79.09
TraesCS7B01G289400.1	Wheat	plastid	74.28	78.43
TraesCS1A01G348500.1	Wheat	plastid	75.0	78.39
TraesCS7A01G386600.1	Wheat	plastid	74.04	78.17
OQU80513	Sorghum	plastid	74.04	78.17
TraesCS1D01G351500.1	Wheat	golgi, plastid	74.76	78.14
TraesCS1B01G363100.1	Wheat	plastid	74.76	78.14
HORVU1Hr1G081550.1	Barley	plastid	74.52	77.69
VIT_17s0000g06270.t01	Wine grape	plastid	76.92	77.48
Zm00001d032187_P001	Maize	plastid	72.36	76.4
GSMUA_Achr7P11540_001	Banana	plastid	76.2	76.2
PGSC0003DMT400065411	Potato	plastid	74.28	75.0
PGSC0003DMT400030247	Potato	plastid	74.28	75.0
KRH56907	Soybean	endoplasmic reticulum	74.04	74.58
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	73.32	74.57
PGSC0003DMT400050235	Potato	plastid	73.56	74.27
TraesCS7D01G383100.1	Wheat	plastid, vacuole	74.04	74.22
Solyc03g115990.1.1	Tomato	plastid	73.08	73.79
VIT_14s0108g00870.t01	Wine grape	plastid	75.72	73.6
CDY61271	Canola	plastid	70.43	73.25
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.88	72.96
AT3G47520.1	Thale cress	plastid	70.67	72.95
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.64	72.33
Bra018137.1-P	Field mustard	plastid	69.71	72.14
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	63.7	70.86
HORVU7Hr1G091760.2	Barley	mitochondrion	74.52	66.81
CDY47402	Canola	plastid	71.15	62.98
GSMUA_Achr5P02000_001	Banana	unclear	50.72	59.27
GSMUA_Achr4P08580_001	Banana	mitochondrion	48.08	57.64
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	48.08	57.47
GSMUA_Achr4P01380_001	Banana	plasma membrane	48.8	57.02
CDX98040	Canola	cytosol	21.15	52.69
CDY19424	Canola	cytosol	20.43	50.0
AT3G53910.1	Thale cress	cytosol	12.02	46.3
CDX77861	Canola	plastid	31.01	45.1
Bra019790.1-P	Field mustard	plastid	35.82	38.11

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060	GO:GO:0055114
EnsemblPlantsGene:GSMUA_Achr6G02650_001	EnsemblPlants:GSMUA_Achr6P02650_001	EnsemblPlants:GSMUA_Achr6T02650_001	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0T3L3	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	SUPFAM:SSF51735	SUPFAM:SSF56327
TIGRFAMs:TIGR01772	UniParc:UPI000296D649	SEG:seg	:	:	:

Description

lactate/malate dehydrogenase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G02650_001]

Coordinates

chr6:+:1718091..1719700

Molecular Weight (calculated)

43391.5 Da

IEP (calculated)

8.272

GRAVY (calculated)

0.216

Length

416 amino acids

Sequence
(BLAST)

001: MTSTAVTAAS IGSVCAQPSL GARSKPSGLS FSCSKTINVF SGLKASSSVV IEADTSFLGK EGIASLQASF VPKIRPKQVF SNQLQPRASS FKVAVLGAAG
101: GIGQPLGLLI KMSPLVSALH LYDIANVKGV AADLSHCNTP AKVLDFTGQS ELANCLKGMD VVVIPAGVPR KPGMTRDDLF NINAGIVKTL VEAVADNCPD
201: AFIHIISNPV NSTVPIAAEV LKQKGVYNPK KLFGVTTLDV VRANAFVAQK KNLKLIDVDV PVIGGHAGIT ILPLLSKTRP SATFTDEEVE KLTLRIQNAG
301: TEVVEAKAGA GSATLSMAYA AARFVESSLR ALDGDGDVYE CCFVESELTE LPFFASRVKL GKNGIEAFIS ADLQGLTDYE AKALEALKPE LKTSIEKGVA
401: FVHKQAATAS AAASAN

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.