Factsheet for VIT_14s0108g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06270.t01	Wine grape	plastid	82.01	84.99
Os08t0434300-01	Rice	plastid	68.69	82.58
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	76.64	80.2
KRH56907	Soybean	endoplasmic reticulum	76.64	79.42
Os01t0829800-01	Rice	plastid	71.5	77.27
TraesCS7B01G289400.1	Wheat	plastid	70.79	76.9
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	71.26	76.83
OQU80513	Sorghum	plastid	70.33	76.4
TraesCS7A01G386600.1	Wheat	plastid	70.33	76.4
TraesCS1A01G348500.1	Wheat	plastid	71.03	76.38
GSMUA_Achr7P11540_001	Banana	plastid	73.83	75.96
CDY61271	Canola	plastid	70.79	75.75
GSMUA_Achr6P02650_001	Banana	plastid	73.6	75.72
TraesCS1B01G363100.1	Wheat	plastid	70.33	75.63
TraesCS1D01G351500.1	Wheat	golgi, plastid	70.33	75.63
HORVU1Hr1G081550.1	Barley	plastid	70.33	75.44
AT3G47520.1	Thale cress	plastid	70.79	75.19
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.8	74.84
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.8	74.84
Bra018137.1-P	Field mustard	plastid	69.86	74.38
Zm00001d032187_P001	Maize	plastid	68.46	74.37
GSMUA_Achr5P23320_001	Banana	peroxisome	54.21	73.89
TraesCS7D01G383100.1	Wheat	plastid, vacuole	70.79	73.01
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	61.22	70.05
HORVU7Hr1G091760.2	Barley	mitochondrion	71.26	65.73
CDY47402	Canola	plastid	71.26	64.89
VIT_19s0014g01640.t01	Wine grape	mitochondrion	49.53	61.1
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	50.23	60.39
VIT_10s0003g01000.t01	Wine grape	mitochondrion	48.83	59.38
VIT_00s0373g00040.t01	Wine grape	peroxisome	52.1	51.38
AT3G53910.1	Thale cress	cytosol	12.38	49.07
CDX77861	Canola	plastid	30.14	45.1

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:100247511	wikigene:100247511	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10
ProteinID:CCB47560	ProteinID:CCB47560.1	UniProt:F6H5T9	EMBL:FN595239	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060	GO:GO:0055114
InterPro:IPR015955	EntrezGene:LOC100247511	wikigene:LOC100247511	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGR:TC64898	TIGRFAMs:TIGR01772
UniParc:UPI0002107EA5	ArrayExpress:VIT_14s0108g00870	EnsemblPlantsGene:VIT_14s0108g00870	EnsemblPlants:VIT_14s0108g00870.t01	unigene:Vvi.701	RefSeq:XP_002283619
RefSeq:XP_002283619.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:29541759..29544138

Molecular Weight (calculated)

45622.9 Da

IEP (calculated)

8.259

GRAVY (calculated)

0.075

Length

428 amino acids

Sequence
(BLAST)

001: MELQLFILRS PFYCKMAATS TANFFTTSTA SCNSKPCMVS KSKPFGLRFN SPNYLRNFSG LKAATSVSCE SESSFLGKES TAAFRDSFAP KAVKQNSDSI
101: TRFQPRASSF KVAILGAAGG IGQPLALLIK MSPLVSTLHL YDIANVKGVT ADLSHCNTPS QVLGFTGAAE LPNSLKGVDV VVIPAGVPRK PGMTRDDLFN
201: INANIVKDLV EAVADTCPDA FIHIISNPVN STVPIAAEVL KQKGVYDPKK LFGVTTLDVV RANTFVAQRK NLKLIDVDVP VVGGHAGITI LPLLSKTKPS
301: VSFTDEEVEE LTVRIQNAGT EVVEAKAGAG SATLSMAYAA ARFVESSLRA LDGDTDVYEC SYVQSELTEL PFFASRIKLG KKGVEAVIPS DLQGLTEYEA
401: KALEALKPEL KASIEKGIAF ANKQPVTA

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.