Factsheet for TraesCS1D01G351500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G348500.1	Wheat	plastid	98.24	98.24
HORVU1Hr1G081550.1	Barley	plastid	96.98	96.74
TraesCS1B01G363100.1	Wheat	plastid	96.73	96.73
Os08t0434300-01	Rice	plastid	82.91	92.7
TraesCS7D01G383100.1	Wheat	plastid, vacuole	92.96	89.16
Solyc09g091070.1.1	Tomato	nucleus	64.82	86.58
OQU80513	Sorghum	plastid	84.92	85.79
Os01t0829800-01	Rice	plastid	85.18	85.61
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	84.42	84.63
Zm00001d032187_P001	Maize	plastid	83.42	84.26
GSMUA_Achr6P02650_001	Banana	plastid	78.14	74.76
GSMUA_Achr5P23320_001	Banana	peroxisome	58.04	73.57
PGSC0003DMT400065411	Potato	plastid	75.13	72.57
PGSC0003DMT400030247	Potato	plastid	75.13	72.57
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.89	72.33
VIT_17s0000g06270.t01	Wine grape	plastid	74.87	72.16
KRH56907	Soybean	endoplasmic reticulum	74.87	72.16
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	74.12	72.13
AT3G47520.1	Thale cress	plastid	72.86	71.96
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.64	71.7
CDY61271	Canola	plastid	71.86	71.5
PGSC0003DMT400050235	Potato	plastid	73.87	71.36
Solyc03g115990.1.1	Tomato	plastid	73.62	71.12
GSMUA_Achr7P11540_001	Banana	plastid	74.12	70.91
Bra018137.1-P	Field mustard	plastid	71.36	70.65
VIT_14s0108g00870.t01	Wine grape	plastid	75.63	70.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	61.31	65.24
CDY47402	Canola	plastid	72.11	61.06
TraesCS3D01G236200.1	Wheat	mitochondrion	51.51	60.29
TraesCS1D01G420500.1	Wheat	mitochondrion	49.75	58.06
TraesCS5D01G019700.1	Wheat	nucleus	50.75	56.42
TraesCS5D01G417600.1	Wheat	nucleus	50.25	56.02
CDX98040	Canola	cytosol	21.61	51.5
CDY19424	Canola	cytosol	20.1	47.06
AT3G53910.1	Thale cress	cytosol	12.31	45.37
CDX77861	Canola	plastid	31.41	43.71
Bra019790.1-P	Field mustard	plastid	37.44	38.11

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
PANTHER:PTHR11540	PANTHER:PTHR11540:SF46	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	EnsemblPlantsGene:TraesCS1D01G351500
EnsemblPlants:TraesCS1D01G351500.1	TIGR:cd01337	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:436653078..436654274

Molecular Weight (calculated)

41767.4 Da

IEP (calculated)

7.499

GRAVY (calculated)

0.140

Length

398 amino acids

Sequence
(BLAST)

001: MPSAVTMTSV SAQAALVSRP RSHGITSYGV LKASSSSVNF ELGSSFLGKT TSLRASVTTR VVPKAKSAAQ ILPEASYKVA VLGAAGGIGQ PLGLLIKMSP
101: LVSELRLYDI ANVKGVAADL SHCNTPSQVM DFTGPAELAN CLKGVDVVVI PAGVPRKPGM TRDDLFNINA GIVKSLIEAV ADNCPEAFIH IISNPVNSTV
201: PIAAEILKQK GVYNPKKLFG VSTLDVVRAN TFVAQKKDLK LIDVDVPVVG GHAGITILPL LSKTRPSVTF TDEETEELTK RIQNAGTEVV EAKAGAGSAT
301: LSMAYAAARF VESSLRALAG DPDVYECTYV QSELTELPFF ASRVKIGKNG VESIISSDLE GVTDYEAKAL EALKPELKAS IEKGIEFAHK QQGAAASV

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.