Factsheet for PGSC0003DMT400030247

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065411	Potato	plastid	100.0	100.0
Solyc09g091070.1.1	Tomato	nucleus	70.39	97.32
PGSC0003DMT400050235	Potato	plastid	83.98	83.98
Os08t0434300-01	Rice	plastid	70.87	82.02
VIT_17s0000g06270.t01	Wine grape	plastid	81.55	81.36
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	79.37	79.95
KRH56907	Soybean	endoplasmic reticulum	79.61	79.42
Os01t0829800-01	Rice	plastid	74.27	77.27
OQU80513	Sorghum	plastid	72.82	76.14
TraesCS1A01G348500.1	Wheat	plastid	73.3	75.88
Zm00001d050409_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	73.06	75.82
TraesCS7B01G289400.1	Wheat	plastid	72.33	75.63
TraesCS1B01G363100.1	Wheat	plastid	72.82	75.38
GSMUA_Achr5P23320_001	Banana	peroxisome	57.28	75.16
TraesCS7A01G386600.1	Wheat	plastid	71.84	75.13
TraesCS1D01G351500.1	Wheat	golgi, plastid	72.57	75.13
GSMUA_Achr7P11540_001	Banana	plastid	75.49	74.76
CDY61271	Canola	plastid	72.57	74.75
AT3G47520.1	Thale cress	plastid	73.06	74.69
HORVU1Hr1G081550.1	Barley	plastid	72.33	74.69
GSMUA_Achr6P02650_001	Banana	plastid	75.0	74.28
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.64	74.21
Bra019504.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	28.64	74.21
Bra018137.1-P	Field mustard	plastid	71.84	73.63
Zm00001d032187_P001	Maize	plastid	70.39	73.6
TraesCS7D01G383100.1	Wheat	plastid, vacuole	72.09	71.57
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.08	70.59
HORVU7Hr1G091760.2	Barley	mitochondrion	72.82	64.66
CDY47402	Canola	plastid	72.57	63.62
PGSC0003DMT400039788	Potato	mitochondrion	49.76	60.12
PGSC0003DMT400032266	Potato	cytosol, extracellular	49.76	59.25
PGSC0003DMT400026930	Potato	plastid	49.27	57.67
PGSC0003DMT400013106	Potato	cytosol	48.79	56.3
AT3G53910.1	Thale cress	cytosol	12.38	47.22
CDX77861	Canola	plastid	30.83	44.41

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:102586760	EntrezGene:102594993	MapMan:23.1.3.4.3	Gene3D:3.40.50.720	Gene3D:3.90.110.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
UniProt:M1CDX2	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866
EnsemblPlantsGene:PGSC0003DMG400011570	PGSC:PGSC0003DMG400011570	EnsemblPlants:PGSC0003DMT400030247	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF46
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000296A568	RefSeq:XP_006340901.1	RefSeq:XP_006367032.1

Description

NAD-malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400011570]

Coordinates

chr9:+:57515586..57519112

Molecular Weight (calculated)

43850.6 Da

IEP (calculated)

8.800

GRAVY (calculated)

0.035

Length

412 amino acids

Sequence
(BLAST)

001: MAAASATTLS VGSATSFGSI ASPKLQSKAF IVKYNTRNYL RNFSGLKAEA FVRCESESSF LGNESVAALR QSITPKARNE KQRSWNHVQP QASYKVAVLG
101: ASGGIGQSLA LLIKMSPLVS SLHLYDIANV KGVAADLSHC NTPAQVFDFT GASELANSLK GVDVVVIPAG VPRKPGMTRD DLFNINANIV KGLVEAVADN
201: CPDAFIHIIS NPVNSTVPIA AEVLKQKGVY DPKKLFGVTT LDVVRANTFV AQKKNLKLID VDVPVIGGHA GITILPLLSK TRPSTTFTAE EVQELTVRIQ
301: NAGTEVVEAK AGAGSATLSM AYAAARFIES SLRALDGDAD VYECSYVQSD LTELPFFASR VKLGRNGVEA LISSDLRGLT EYEQKALEAL KPELKASIEK
401: GITYAQKQTV TA

Best Arabidopsis Sequence Match ( AT3G47520.1 )
(BLAST)

001: MATATSASLF STVSSSYSKA SSIPHSRLQS VKFNSVPSFT GLKSTSLISG SDSSSLAKTL RGSVTKAQTS DKKPYGFKIN ASYKVAVLGA AGGIGQPLSL
101: LIKMSPLVST LHLYDIANVK GVAADLSHCN TPSQVRDFTG PSELADCLKD VNVVVIPAGV PRKPGMTRDD LFNINANIVK TLVEAVAENC PNAFIHIISN
201: PVNSTVPIAA EVLKKKGVYD PKKLFGVTTL DVVRANTFVS QKKNLKLIDV DVPVIGGHAG ITILPLLSKT KPSVNFTDEE IQELTVRIQN AGTEVVDAKA
301: GAGSATLSMA YAAARFVESS LRALDGDGDV YECSFVESTL TDLPFFASRV KIGKNGLEAV IESDLQGLTE YEQKALEALK VELKASIDKG VAFANKPAAA
401: AAN

Arabidopsis Description

MDHMalate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.