Factsheet for PGSC0003DMT400039788

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	97.65	97.37
PGSC0003DMT400032266	Potato	cytosol, extracellular	89.44	88.15
KRH55117	Soybean	mitochondrion	86.22	85.22
KRH26205	Soybean	mitochondrion	85.92	84.93
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	85.34	83.62
GSMUA_Achr4P08580_001	Banana	mitochondrion	85.04	83.57
Os05t0574400-01	Rice	extracellular	82.99	83.24
Os01t0649100-01	Rice	mitochondrion	82.4	82.65
AT3G15020.1	Thale cress	mitochondrion	82.4	82.4
Bra038112.1-P	Field mustard	mitochondrion	75.37	82.37
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	82.11	82.35
EES19985	Sorghum	mitochondrion	82.11	82.35
Zm00001d039089_P001	Maize	mitochondrion	81.82	82.06
CDY59402	Canola	mitochondrion	81.52	81.52
AT1G53240.1	Thale cress	mitochondrion	81.52	81.52
Bra030951.1-P	Field mustard	mitochondrion	81.52	81.52
CDY25868	Canola	mitochondrion	81.52	81.52
CDY26002	Canola	mitochondrion	81.82	81.34
CDY55845	Canola	mitochondrion	81.23	81.23
CDY02518	Canola	mitochondrion	81.23	81.23
CDY24107	Canola	mitochondrion	80.65	80.88
Bra039662.1-P	Field mustard	mitochondrion	80.65	80.88
VIT_19s0014g01640.t01	Wine grape	mitochondrion	81.82	80.4
HORVU3Hr1G058460.1	Barley	mitochondrion	80.06	80.06
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	80.06	80.06
TraesCS3D01G236200.1	Wheat	mitochondrion	79.77	80.0
TraesCS1A01G412900.1	Wheat	plastid	79.77	79.77
TraesCS1D01G420500.1	Wheat	mitochondrion	79.77	79.77
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	79.47	79.71
TraesCS3A01G234800.2	Wheat	mitochondrion	78.3	78.53
CDY55842	Canola	mitochondrion	30.5	77.04
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	82.11	76.09
PGSC0003DMT400026930	Potato	plastid	61.29	59.38
PGSC0003DMT400013106	Potato	cytosol	61.88	59.1
KXG33002	Sorghum	cytosol, nucleus, peroxisome	82.4	58.3
HORVU1Hr1G090710.1	Barley	cytosol	63.34	54.14
PGSC0003DMT400050235	Potato	plastid	60.41	50.0
PGSC0003DMT400065411	Potato	plastid	60.12	49.76
PGSC0003DMT400030247	Potato	plastid	60.12	49.76
HORVU1Hr1G090720.1	Barley	peroxisome	15.25	24.64

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	EntrezGene:102606140	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752
GO:GO:0030060	GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M1B8S4	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	EnsemblPlantsGene:PGSC0003DMG400015379	PGSC:PGSC0003DMG400015379	EnsemblPlants:PGSC0003DMT400039788	PIRSF:PIRSF000102	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00029657ED
RefSeq:XP_006358950.1	SEG:seg	:	:	:	:

Description

Malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400015379]

Coordinates

chr12:+:278829..283455

Molecular Weight (calculated)

35669.2 Da

IEP (calculated)

9.091

GRAVY (calculated)

0.115

Length

341 amino acids

Sequence
(BLAST)

001: MRTSMLRTLA RRTSTAGRRR GFASESAPDR KVAILGAAGG IGQPLSLLMK LNPLVSRLAL YDIAGTPGVA ADVSHINTRS EILGYAGEEQ LGKALEGADV
101: VIIPAGVPRK PGMTRDDLFN INAGIVKSLC TAIAKYCPHA LVNVISNPVN STVPIASEVF KKAGTYDEKR LFGVTTLDVV RAKTFYAGKA KVNVADVIVP
201: VVGGHAGVTI LPLFSQATPS ANLSSEEIEA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG AIFADACLKG LNGVPDVVEC SFVQSTVTDL PFFASKVRLG
301: KNGVEEVLGL GALSDYEKEG LEALKPELKS SIEKGIKFAH A

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.