Factsheet for TraesCS3D01G236200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

plastid: 16595579
extracellular: 19786127
mitochondrion: 21043471
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	99.71	99.71
TraesCS3A01G234800.2	Wheat	mitochondrion	98.53	98.53
HORVU3Hr1G058460.1	Barley	mitochondrion	97.06	96.77
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	89.41	89.41
Os01t0649100-01	Rice	mitochondrion	89.41	89.41
TraesCS1D01G420500.1	Wheat	mitochondrion	86.18	85.92
Bra030951.1-P	Field mustard	mitochondrion	80.59	80.35
Bra038112.1-P	Field mustard	mitochondrion	73.53	80.13
CDY25868	Canola	mitochondrion	80.29	80.06
CDY59402	Canola	mitochondrion	80.29	80.06
AT1G53240.1	Thale cress	mitochondrion	80.29	80.06
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	80.29	79.82
CDY02518	Canola	mitochondrion	80.0	79.77
CDY55845	Canola	mitochondrion	80.0	79.77
PGSC0003DMT400039788	Potato	mitochondrion	80.0	79.77
KRH55117	Soybean	mitochondrion	80.59	79.42
CDY24107	Canola	mitochondrion	79.41	79.41
CDY26002	Canola	mitochondrion	80.0	79.3
AT3G15020.1	Thale cress	mitochondrion	79.12	78.89
KRH26205	Soybean	mitochondrion	80.0	78.84
Bra039662.1-P	Field mustard	mitochondrion	78.82	78.82
PGSC0003DMT400032266	Potato	cytosol, extracellular	79.71	78.32
Solyc07g062650.2.1	Tomato	extracellular	79.71	78.32
VIT_10s0003g01000.t01	Wine grape	mitochondrion	80.88	78.12
GSMUA_Achr4P08580_001	Banana	mitochondrion	79.12	77.52
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	78.82	77.01
VIT_19s0014g01640.t01	Wine grape	mitochondrion	77.35	75.79
CDY55842	Canola	mitochondrion	29.71	74.81
TraesCS5D01G019700.1	Wheat	nucleus	66.47	63.13
KXG33002	Sorghum	cytosol, nucleus, peroxisome	88.24	62.24
TraesCS5D01G417600.1	Wheat	nucleus	64.41	61.34
TraesCS1D01G351500.1	Wheat	golgi, plastid	60.29	51.51
TraesCS7D01G383100.1	Wheat	plastid, vacuole	60.0	49.16

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF45	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS3D01G236200	EnsemblPlants:TraesCS3D01G236200.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:326701120..326704515

Molecular Weight (calculated)

35468.9 Da

IEP (calculated)

8.583

GRAVY (calculated)

0.138

Length

340 amino acids

Sequence
(BLAST)

001: MRPSVMRSAA QLLRRRNYSS ASGQQARKVA ILGAAGGIGQ PLSLLMKLNP LVSSLSLYDI AATPGVAADV SHINSPALVK GFMADDQLAE ALDGADLVII
101: PAGVPRKPGM TRDDLFNINA GIVKNLCTAI AKYCPNALVN MISNPVNSTV PIAAEVFKKA GTYDEKRLFG VTTLDVVRAR TFYAGKANVD VNTVDVPVVG
201: GHAGITILPL FSQATPSTNA LSAEEIKALT KRTQEGGTEV VEAKAGKGSA TLSMAYAGAV FGDACLKGLN GVPDIVECSY VQSTVTELPF FASKVRLGKN
301: GVEEVLGLGQ LTQFEKEGLE ALKGELKSSI EKGVAFANAS

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.