CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
extracellular: 22945350
extracellular: 25724908
endoplasmic reticulum: 27224218
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26205	Soybean	mitochondrion	97.97	97.97
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	85.51	86.26
Bra038112.1-P	Field mustard	mitochondrion	77.97	86.22
PGSC0003DMT400039788	Potato	mitochondrion	85.22	86.22
CDY25868	Canola	mitochondrion	84.93	85.92
CDY59402	Canola	mitochondrion	84.93	85.92
Bra039662.1-P	Field mustard	mitochondrion	84.64	85.88
CDY24107	Canola	mitochondrion	84.64	85.88
CDY02518	Canola	mitochondrion	84.64	85.63
CDY55845	Canola	mitochondrion	84.64	85.63
PGSC0003DMT400032266	Potato	cytosol, extracellular	85.8	85.55
Solyc07g062650.2.1	Tomato	extracellular	85.8	85.55
CDY26002	Canola	mitochondrion	84.93	85.42
Bra030951.1-P	Field mustard	mitochondrion	84.35	85.34
Os01t0649100-01	Rice	mitochondrion	83.77	85.0
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	83.77	85.0
AT3G15020.1	Thale cress	mitochondrion	83.77	84.75
AT1G53240.1	Thale cress	mitochondrion	83.77	84.75
Os05t0574400-01	Rice	extracellular	82.9	84.12
Zm00001d039089_P001	Maize	mitochondrion	82.61	83.82
EES19985	Sorghum	mitochondrion	82.61	83.82
GSMUA_Achr4P08580_001	Banana	mitochondrion	83.19	82.71
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	80.87	81.82
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	82.32	81.61
TraesCS1D01G420500.1	Wheat	mitochondrion	80.58	81.52
TraesCS1A01G412900.1	Wheat	plastid	80.58	81.52
HORVU3Hr1G058460.1	Barley	mitochondrion	80.29	81.23
VIT_19s0014g01640.t01	Wine grape	mitochondrion	81.16	80.69
TraesCS3D01G236200.1	Wheat	mitochondrion	79.42	80.59
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	79.42	80.59
CDY55842	Canola	mitochondrion	31.3	80.0
TraesCS3A01G234800.2	Wheat	mitochondrion	78.26	79.41
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	82.9	77.72
KRH49884	Soybean	endoplasmic reticulum, nucleus	64.06	62.08
KRH28298	Soybean	endoplasmic reticulum, nucleus	63.48	62.04
KRH42019	Soybean	nucleus	63.48	61.52
KRH77189	Soybean	endoplasmic reticulum	51.3	61.25
KRH48807	Soybean	mitochondrion	25.8	60.14
KXG33002	Sorghum	cytosol, nucleus, peroxisome	83.48	59.75
HORVU1Hr1G090710.1	Barley	cytosol	64.06	55.39
KRH03482	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	61.45	51.83
KRH56907	Soybean	endoplasmic reticulum	60.0	50.12
HORVU1Hr1G090720.1	Barley	peroxisome	16.23	26.54

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	EMBL:ACUP02003886	EnsemblPlantsGene:GLYMA_06G231500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0055114	UniProt:I1KDM8	InterPro:IPR015955	EnsemblPlants:KRH55117
ProteinID:KRH55117	ProteinID:KRH55117.1	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	MetaCyc:PWY-1622	MetaCyc:PWY-5392	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115	MetaCyc:PWY-7383
SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI0002339BB0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:36231862..36236355

Molecular Weight (calculated)

35988.6 Da

IEP (calculated)

8.299

GRAVY (calculated)

0.088

Length

345 amino acids

Sequence
(BLAST)

001: MMKPSMLRSL HSAATRGASH LSRRGYASEP VPERKVAVLG AAGGIGQPLS LLMKLNPLVS SLSLYDIAGT PGVAADVSHI NTGSEVVGYQ GDEELGKALE
101: GADVVIIPAG VPRKPGMTRD DLFNINAGIV KTLCTAIAKY CPHALVNMIS NPVNSTVPIA AEVFKKAGTY DEKRLFGVTT LDVVRAKTFY AGKANVPVAG
201: VNVPVVGGHA GITILPLFSQ ATPKANLDDD VIKALTKRTQ DGGTEVVEAK AGKGSATLSM AYAGALFADA CLKGLNGVPD VVECSFVQST VTELPYFASK
301: VRLGKNGVEE VLGLGPLSDF EQQGLESLKP ELKSSIEKGI KFANQ

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.