Factsheet for TraesCS1B01G443200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 19786127

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G420500.1	Wheat	mitochondrion	98.53	98.53
TraesCS1A01G412900.1	Wheat	plastid	98.24	98.24
Os05t0574400-01	Rice	extracellular	89.15	89.41
Zm00001d039089_P001	Maize	mitochondrion	87.98	88.24
EES19985	Sorghum	mitochondrion	87.98	88.24
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	85.63	85.88
VIT_10s0003g01000.t01	Wine grape	mitochondrion	84.75	82.1
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	87.98	81.52
Bra038112.1-P	Field mustard	mitochondrion	74.49	81.41
CDY25868	Canola	mitochondrion	81.23	81.23
Solyc07g062650.2.1	Tomato	extracellular	82.4	81.21
PGSC0003DMT400032266	Potato	cytosol, extracellular	82.4	81.21
CDY55845	Canola	mitochondrion	80.94	80.94
CDY59402	Canola	mitochondrion	80.94	80.94
Bra030951.1-P	Field mustard	mitochondrion	80.94	80.94
KRH26205	Soybean	mitochondrion	81.82	80.87
KRH55117	Soybean	mitochondrion	81.82	80.87
CDY02518	Canola	mitochondrion	80.65	80.65
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	82.11	80.46
GSMUA_Achr4P08580_001	Banana	mitochondrion	81.82	80.4
AT1G53240.1	Thale cress	mitochondrion	80.35	80.35
CDY26002	Canola	mitochondrion	80.65	80.17
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	80.35	80.12
PGSC0003DMT400039788	Potato	mitochondrion	80.06	80.06
CDY24107	Canola	mitochondrion	79.77	80.0
Bra039662.1-P	Field mustard	mitochondrion	79.47	79.71
AT3G15020.1	Thale cress	mitochondrion	79.18	79.18
VIT_19s0014g01640.t01	Wine grape	mitochondrion	79.18	77.81
CDY55842	Canola	mitochondrion	29.33	74.07
HORVU1Hr1G090710.1	Barley	cytosol	75.95	64.91
TraesCS5B01G012400.1	Wheat	cytosol	64.22	61.17
TraesCS5B01G412500.1	Wheat	plastid	59.82	54.69
TraesCS7B01G289400.1	Wheat	plastid	57.77	50.0
TraesCS1B01G363100.1	Wheat	plastid	57.48	49.25
HORVU1Hr1G090720.1	Barley	peroxisome	17.3	27.96

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	MapMan:2.3.8	Gene3D:3.40.50.720	Gene3D:3.90.110.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF45	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS1B01G443200	EnsemblPlants:TraesCS1B01G443200.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:664297294..664302406

Molecular Weight (calculated)

35482.1 Da

IEP (calculated)

8.605

GRAVY (calculated)

0.159

Length

341 amino acids

Sequence
(BLAST)

001: MRMSLLRSAS QHLRRRRGYS STPAQPERKV AILGAAGGIG QPLALLMKLN PLVSSLSLYD IAATPGVAAD VSHINTRALV KGFVGDDQLG EALEGADLVI
101: IPAGVPRKPG MTRDDLFKIN AGIVKGLCTA IATHCPNALV NMISNPVNST VPIAAEVFKK AGTYDEKKLF GVTTLDVVRA KTFYAGKANV PVTGVNVPVV
201: GGHAGITILP LFSQATPASN ALSHEDLVAL TKRTQDGGTE VVEAKAGKGS ATLSMAYAGA VFGDACLKGL NGVPDIVECS FVQSTVTELP FFASKVRLGK
301: SGVEEVMGLG ELSALEKEGL ESLKGELLSS IEKGVKFAQE S

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.