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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 8
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 cytosol: 18757068
nucleus: 21132161
mitochondrion: 21766870
extracellular: 22945350
endoplasmic reticulum: 23041469
extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 22945350 doi
C Liao, F Hochholdinger, C Li
Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 18757068 doi
NW Oehrle, AD Sarma, JK Waters, DW Emerich
United States Department of Agriculture, Curtis Hall, University of Missouri, Columbia, MO 65211, United States.
msms PMID: 21766870 doi
S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH55117 Soybean mitochondrion 97.97 97.97
Solyc12g014180.1.1 Tomato mitochondrion, unclear 85.22 85.96
PGSC0003DMT400039788 Potato mitochondrion 84.93 85.92
Bra038112.1-P Field mustard mitochondrion 77.39 85.58
CDY25868 Canola mitochondrion 84.35 85.34
CDY59402 Canola mitochondrion 84.35 85.34
Bra039662.1-P Field mustard mitochondrion 84.06 85.29
CDY24107 Canola mitochondrion 84.06 85.29
Bra030951.1-P Field mustard mitochondrion 84.06 85.04
CDY02518 Canola mitochondrion 84.06 85.04
CDY55845 Canola mitochondrion 84.06 85.04
CDY26002 Canola mitochondrion 84.35 84.84
Solyc07g062650.2.1 Tomato extracellular 84.93 84.68
PGSC0003DMT400032266 Potato cytosol, extracellular 84.93 84.68
Os01t0649100-01 Rice mitochondrion 83.19 84.41
Zm00001d044042_P001 Maize extracellular, mitochondrion, plastid 83.19 84.41
AT3G15020.1 Thale cress mitochondrion 83.19 84.16
AT1G53240.1 Thale cress mitochondrion 83.19 84.16
Os05t0574400-01 Rice extracellular 82.32 83.53
Zm00001d039089_P001 Maize mitochondrion 82.03 83.24
EES19985 Sorghum mitochondrion 82.03 83.24
GSMUA_Achr4P08580_001 Banana mitochondrion 82.32 81.84
TraesCS1B01G443200.1 Wheat extracellular, mitochondrion 80.87 81.82
TraesCS1D01G420500.1 Wheat mitochondrion 80.58 81.52
TraesCS1A01G412900.1 Wheat plastid 80.58 81.52
GSMUA_AchrUn_... Banana mitochondrion, unclear 81.74 81.03
HORVU3Hr1G058460.1 Barley mitochondrion 79.71 80.65
TraesCS3D01G236200.1 Wheat mitochondrion 78.84 80.0
TraesCS3B01G265000.1 Wheat golgi, mitochondrion, unclear 78.84 80.0
VIT_19s0014g01640.t01 Wine grape mitochondrion 80.29 79.83
CDY55842 Canola mitochondrion 31.01 79.26
TraesCS3A01G234800.2 Wheat mitochondrion 77.68 78.82
Zm00001d009640_P002 Maize mitochondrion, plasma membrane 82.32 77.17
KRH28298 Soybean endoplasmic reticulum, nucleus 63.77 62.32
KRH49884 Soybean endoplasmic reticulum, nucleus 63.48 61.52
KRH77189 Soybean endoplasmic reticulum 51.3 61.25
KRH42019 Soybean nucleus 62.9 60.96
KRH48807 Soybean mitochondrion 25.8 60.14
KXG33002 Sorghum cytosol, nucleus, peroxisome 82.9 59.34
HORVU1Hr1G090710.1 Barley cytosol 64.06 55.39
KRH03482 Soybean endoplasmic reticulum, mitochondrion, nucleus, plastid 62.03 52.32
KRH56907 Soybean endoplasmic reticulum 60.58 50.61
HORVU1Hr1G090720.1 Barley peroxisome 16.23 26.54
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37MapMan:2.3.8Gene3D:3.40.50.720Gene3D:3.90.110.10EntrezGene:606509ProteinID:AAD56659.1
EMBL:ACUP02007606EnsemblPlantsGene:GLYMA_12G159300GO:GO:0003674GO:GO:0003824GO:GO:0005975GO:GO:0006091
GO:GO:0006099GO:GO:0006108GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491
GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060GO:GO:0055114InterPro:IPR015955
EnsemblPlants:KRH26205ProteinID:KRH26205ProteinID:KRH26205.1InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_N
InterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_ASInterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866
PIRSF:PIRSF000102ScanProsite:PS00068PANTHER:PTHR11540PANTHER:PTHR11540:SF44MetaCyc:PWY-1622MetaCyc:PWY-5392
MetaCyc:PWY-561MetaCyc:PWY-5690MetaCyc:PWY-5913MetaCyc:PWY-6728MetaCyc:PWY-6969MetaCyc:PWY-7115
MetaCyc:PWY-7383UniProt:Q9SPB8SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01772UniParc:UPI00000A4166
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr12:-:27787400..27791365
Molecular Weight (calculated)
36143.9 Da
IEP (calculated)
8.309
GRAVY (calculated)
0.126
Length
345 amino acids
Sequence
(BLAST)
001: MMKPSMLRSL HSAATRGASH LFRRGYASEP VPERKVAVLG AAGGIGQPLS LLMKLNPLVS SLSLYDIAGT PGVAADISHI NTRSEVVGYQ GDEELGKALE
101: GADVVIIPAG VPRKPGMTRD DLFNINAGIV KTLCTAIAKY CPHALVNMIS NPVNSTVPIA AEVFKKAGTY DEKRLFGVTT LDVVRAKTFY AGKANVPVAG
201: VNVPVVGGHA GITILPLFSQ ATPKANLDDD VIKALTKRTQ DGGTEVVEAK AGKGSATLSM AYAGALFADA CLKGLNGVPD VVECSFVQST VTELPFFASK
301: VRLGTVGVEE VLGLGHLSDF EQQGLESLKP ELKSSIEKGI KFANQ
Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)
001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q
Arabidopsis Description
mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.