CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17513	Canola	cytosol	42.96	37.18
Bra038112.1-P	Field mustard	mitochondrion	85.19	36.86
CDY24107	Canola	mitochondrion	85.19	33.82
CDY02518	Canola	mitochondrion	85.19	33.72
CDY59402	Canola	mitochondrion	85.19	33.72
CDY25868	Canola	mitochondrion	85.19	33.72
CDY26002	Canola	mitochondrion	85.19	33.53
CDY55845	Canola	mitochondrion	84.44	33.43
AT1G53240.1	Thale cress	mitochondrion	83.7	33.14
CDY43430	Canola	cytosol	42.22	32.95
KRH55117	Soybean	mitochondrion	80.0	31.3
KRH26205	Soybean	mitochondrion	79.26	31.01
Solyc12g014180.1.1	Tomato	mitochondrion, unclear	78.52	30.99
EES19985	Sorghum	mitochondrion	77.04	30.59
PGSC0003DMT400039788	Potato	mitochondrion	77.04	30.5
Zm00001d044042_P001	Maize	extracellular, mitochondrion, plastid	76.3	30.29
Zm00001d039089_P001	Maize	mitochondrion	75.56	30.0
Os05t0574400-01	Rice	extracellular	75.56	30.0
HORVU3Hr1G058460.1	Barley	mitochondrion	75.56	29.91
TraesCS3D01G236200.1	Wheat	mitochondrion	74.81	29.71
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	74.81	29.71
Os01t0649100-01	Rice	mitochondrion	74.81	29.71
VIT_19s0014g01640.t01	Wine grape	mitochondrion	75.56	29.39
TraesCS1D01G420500.1	Wheat	mitochondrion	74.07	29.33
TraesCS1A01G412900.1	Wheat	plastid	74.07	29.33
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	74.07	29.33
TraesCS3A01G234800.2	Wheat	mitochondrion	73.33	29.12
GSMUA_Achr4P08580_001	Banana	mitochondrion	74.81	29.11
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	74.81	29.02
Solyc07g062650.2.1	Tomato	extracellular	74.07	28.9
PGSC0003DMT400032266	Potato	cytosol, extracellular	74.07	28.9
Zm00001d009640_P002	Maize	mitochondrion, plasma membrane	75.56	27.72
HORVU1Hr1G090710.1	Barley	cytosol	74.07	25.06
CDX98040	Canola	cytosol	29.63	23.95
CDY25631	Canola	plastid	60.0	22.95
CDX89514	Canola	cytosol	59.26	22.66
CDY21594	Canola	cytosol	60.0	22.63
CDY34030	Canola	mitochondrion	46.67	22.58
CDX85803	Canola	plastid	59.26	22.35
CDY44813	Canola	cytosol	59.26	22.35
CDY19424	Canola	cytosol	27.41	21.76
KXG33002	Sorghum	cytosol, nucleus, peroxisome	77.04	21.58
CDY61271	Canola	plastid	59.26	20.0
CDY47402	Canola	plastid	59.26	17.02
CDX69893	Canola	cytosol	60.0	14.67
CDX77861	Canola	plastid	29.63	13.99
CDY21789	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	14.81	12.58
HORVU1Hr1G090720.1	Barley	peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:CDY55842	EnsemblPlantsGene:GSBRNA2T00017388001	Gene3D:3.90.110.10	GO:A0A078IZ89	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016616	GO:GO:0055114	InterPro:IPR015955
InterPro:Lactate/malate_DH_C	InterPro:Lactate_DH/Glyco_Ohase_4_C	PANTHER:PTHR11540	PANTHER:PTHR11540:SF44	PFAM:PF02866	ProteinID:CDY55842
ProteinID:CDY55842.1	SUPFAM:SSF56327	UniParc:UPI0004EF18B5	UniProt:A0A078IZ89	MapMan:35.1	:

Description

BnaCnng29310DBnaCnng29310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZ89]

Coordinates

chrLK033433:-:25070..27029

Molecular Weight (calculated)

14078.0 Da

IEP (calculated)

8.477

GRAVY (calculated)

0.137

Length

135 amino acids

Sequence
(BLAST)

001: MALATRSKVN VPVIGGHAGV TIIPLLSQAY LSLTSSLCDV PTALTKRTQD GGTEVVEAKA GKGSATLSMA YAGALFADAC LKGLNGVPDV EECSYVQSTI
101: TELPFFASKV RLGKNGVEDP KLKSFIEKGV KFANQ

Best Arabidopsis Sequence Match ( AT1G53240.1 )
(BLAST)

001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q

Arabidopsis Description

mMDH1Malate dehydrogenase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP06]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.