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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, peroxisome
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90175
CDX99799
CDY11941
CDY20736
CDY36789
CDY43325
CDY49390
CDY50786
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G22780.1 CDX90175 AT1G29260.1 24879895
AT2G22780.1 CDX99799 AT1G29260.1 24879895
AT2G22780.1 CDY43325 AT1G29260.1 24879895
AT2G22780.1 CDY50786 AT1G29260.1 24879895
AT2G22780.1 CDY11941 AT5G56290.1 24879895
AT2G22780.1 CDY20736 AT5G56290.1 24879895
AT2G22780.1 CDY36789 AT5G56290.1 24879895
AT2G22780.1 CDY49390 AT5G56290.1 24879895
AT2G22780.1 CDY66434 AT5G56290.1 24879895
AT2G22780.1 CDY66435 AT5G56290.1 24879895
AT2G22780.1 CDY67858 AT5G56290.1 24879895
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25631 Canola plastid 98.87 98.87
Bra030204.1-P Field mustard cytosol 98.58 98.58
AT2G22780.1 Thale cress cytosol 93.77 93.5
PGSC0003DMT400026930 Potato plastid 82.72 82.95
Solyc02g063490.2.1 Tomato plastid 82.72 82.95
CDY43430 Canola cytosol 39.94 81.5
CDY44813 Canola cytosol 80.74 79.61
CDY21594 Canola cytosol 80.74 79.61
CDX85803 Canola plastid 80.74 79.61
KRH28298 Soybean endoplasmic reticulum, nucleus 79.6 79.6
CDY17513 Canola cytosol 35.13 79.49
GSMUA_Achr4P01380_001 Banana plasma membrane 79.32 78.65
Os12t0632700-01 Rice extracellular, nucleus, plastid 78.75 78.09
TraesCS5A01G014300.1 Wheat nucleus, plastid 77.9 76.82
TraesCS5D01G019700.1 Wheat nucleus 77.62 76.54
KRH77189 Soybean endoplasmic reticulum 62.61 76.47
TraesCS5B01G012400.1 Wheat cytosol 77.05 75.98
Zm00001d041243_P001 Maize mitochondrion 77.34 75.83
KRH48807 Soybean mitochondrion 30.59 72.97
VIT_00s0373g00040.t01 Wine grape peroxisome 83.29 67.74
HORVU5Hr1G002010.1 Barley plastid 77.9 67.24
CDY55845 Canola mitochondrion 60.62 62.76
CDY25868 Canola mitochondrion 60.62 62.76
CDY59402 Canola mitochondrion 60.06 62.17
CDY24107 Canola mitochondrion 59.77 62.06
CDY02518 Canola mitochondrion 59.77 61.88
CDY26002 Canola mitochondrion 59.77 61.52
KXG24112 Sorghum plastid 77.62 61.44
CDY55842 Canola mitochondrion 22.66 59.26
CDY21789 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 24.93 55.35
CDY61271 Canola plastid 58.36 51.5
CDX69893 Canola cytosol 80.45 51.45
CDY34030 Canola mitochondrion 36.54 46.24
CDY47402 Canola plastid 58.64 44.04
CDX98040 Canola cytosol 18.41 38.92
CDY19424 Canola cytosol 17.0 35.29
CDX77861 Canola plastid 25.21 31.12
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:5.7.3.6.5GO:A0A078DLT6EnsemblPlants:CDX89514
ProteinID:CDX89514ProteinID:CDX89514.1GO:GO:0003674GO:GO:0003824GO:GO:0005975GO:GO:0006091
GO:GO:0006099GO:GO:0006108GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491
GO:GO:0016615GO:GO:0016616GO:GO:0019752GO:GO:0030060GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00149795001
InterPro:IPR015955InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CInterPro:Malate_DH_AS
InterPro:Malate_DH_type1InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866PIRSF:PIRSF000102ScanProsite:PS00068
PANTHER:PTHR11540PANTHER:PTHR11540:SF21MetaCyc:PWY-1622MetaCyc:PWY-5392MetaCyc:PWY-561MetaCyc:PWY-5690
MetaCyc:PWY-5913MetaCyc:PWY-6728MetaCyc:PWY-6969MetaCyc:PWY-7115MetaCyc:PWY-7383SUPFAM:SSF51735
SUPFAM:SSF56327TIGRFAMs:TIGR01772UniParc:UPI0004EE141B:::
Description
BnaC04g35330D
Coordinates
chrLK031859:-:644718..647943
Molecular Weight (calculated)
37111.4 Da
IEP (calculated)
8.051
GRAVY (calculated)
0.157
Length
353 amino acids
Sequence
(BLAST)
001: MDANQRIARI SAHLNPPNLD QIGSGSGLER VGCRAKGGSP GSKVAILGAA GGIGQPLAML MKMNPLVSLL HLYDVANAPG VTADISHMDT SAIVRGFLGQ
101: SQLEEALTGM DLVIIPAGVP RKPGMTRDDL FKINAGIVRT LSEAIAKCCP KAIVNIISNP VNSTVPIAAE VFKKAGTFDP KKLMGVTMLD VVRANTFVAE
201: VMSLDPREVD VPVVGGHAGV TILPLLSQVK PPCSFTQKEI EYLTDRIQNG GTEVVEAKAG AGSATLSMAY AAVKFADACL KGLRGDANIV ECAFVASHVT
301: DLPFFASKVR LGRCGVDEVY GLGPLNEYER MGLEKAKQEL EGSIAKGVTF VKK
Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)
001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK
Arabidopsis Description
PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.