CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04830
EES15431

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	EES04830	AT1G29260.1	24879895
AT2G22780.1	EES15431	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041243_P001	Maize	mitochondrion	76.91	95.28
Os12t0632700-01	Rice	extracellular, nucleus, plastid	74.89	93.82
TraesCS5D01G019700.1	Wheat	nucleus	72.65	90.5
TraesCS5B01G012400.1	Wheat	cytosol	72.42	90.22
TraesCS5A01G014300.1	Wheat	nucleus, plastid	72.42	90.22
GSMUA_Achr5P02000_001	Banana	unclear	69.51	87.08
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	67.49	84.55
HORVU5Hr1G002010.1	Barley	plastid	76.68	83.62
PGSC0003DMT400026930	Potato	plastid	65.02	82.39
Solyc02g063490.2.1	Tomato	plastid	64.8	82.1
KRH28298	Soybean	endoplasmic reticulum, nucleus	64.8	81.87
KRH49884	Soybean	endoplasmic reticulum, nucleus	65.02	81.46
PGSC0003DMT400013106	Potato	cytosol	64.8	80.95
KRH42019	Soybean	nucleus	64.57	80.9
AT2G22780.1	Thale cress	cytosol	63.45	79.94
CDY44813	Canola	cytosol	63.45	79.05
Bra028624.1-P	Field mustard	cytosol	63.45	79.05
CDX85803	Canola	plastid	63.45	79.05
Bra009397.1-P	Field mustard	cytosol	63.23	78.77
CDY25631	Canola	plastid	62.33	78.75
Bra030204.1-P	Field mustard	cytosol	62.33	78.75
CDY21594	Canola	cytosol	63.0	78.49
KRH77189	Soybean	endoplasmic reticulum	50.45	77.85
CDX89514	Canola	cytosol	61.44	77.62
KRH48807	Soybean	mitochondrion	24.66	74.32
KXG37460	Sorghum	mitochondrion	69.28	69.91
VIT_00s0373g00040.t01	Wine grape	peroxisome	67.71	69.59
AT5G09660.4	Thale cress	cytosol	56.05	68.87
EES19985	Sorghum	mitochondrion	50.22	65.88
CDY43430	Canola	cytosol	25.11	64.74
CDY17513	Canola	cytosol	22.2	63.46
CDX69893	Canola	cytosol	65.25	52.72
OQU90313	Sorghum	plastid	45.29	52.06
OQU80513	Sorghum	plastid	45.29	51.27
KXG33002	Sorghum	cytosol, nucleus, peroxisome	50.45	46.68
CDY34030	Canola	mitochondrion	25.34	40.5

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	UniProt:A0A1B6PEI8	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	EnsemblPlants:KXG24112	ProteinID:KXG24112	ProteinID:KXG24112.1	InterPro:Lactate/malate_DH_C
InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056
PFAM:PF02866	ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	MetaCyc:PWY-1622	MetaCyc:PWY-5392
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-5913	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7115
MetaCyc:PWY-7383	EnsemblPlantsGene:SORBI_3008G186200	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00081ACF39
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:62080570..62086083

Molecular Weight (calculated)

47102.5 Da

IEP (calculated)

8.622

GRAVY (calculated)

0.131

Length

446 amino acids

Sequence
(BLAST)

001: MAPPLCLRTP CPAAFLPMPH QAITTVDPFP LKRARIVRSA GSNNQRHLRP TSLSLLCFLQ LQVQEASIQL SVSATPQPEA TMDQQHQQGL DAAAARRMAT
101: LASHLRPHPA SPPQVEDVPL LRGSNCRAKG AAPGFKVAIL GAAGGIGQPL ALLMKINPLV SVLHLYDVVN TPGVTADISH MSTGAVVRGF LGQPQLENAL
201: TGMDLVIIPA GVPRKPGMTR DDLFNINAGI VRTLCEGIAK CCPNAIVNVI SNPVNSTVPI AAEVFKKAGT YDPKRLLGVT TLDVVRANTF VGEVLGLDPR
301: EVNVPVIGGH AGITILPLLS QVNPSCSFTS EEVKYLTSRI QNGGTEVVEA KAGAGSATLS MAYAAAKFAD ACLRGLRGDA GIVECSYVAS QVTELPFFAS
401: KVRLGRCGIE EILPLGPLNE FERAGLEKAK KELAESIQKG VSFINK

Best Arabidopsis Sequence Match ( AT2G22780.1 )
(BLAST)

001: MDPNQRIARI SAHLNPPNLH NQIADGSGLN RVACRAKGGS PGFKVAILGA AGGIGQPLAM LMKMNPLVSV LHLYDVANAP GVTADISHMD TSAVVRGFLG
101: QPQLEEALTG MDLVIIPAGV PRKPGMTRDD LFNINAGIVR TLSEAIAKCC PKAIVNIISN PVNSTVPIAA EVFKKAGTFD PKKLMGVTML DVVRANTFVA
201: EVMSLDPREV EVPVVGGHAG VTILPLLSQV KPPCSFTQKE IEYLTDRIQN GGTEVVEAKA GAGSATLSMA YAAVEFADAC LRGLRGDANI VECAYVASHV
301: TELPFFASKV RLGRCGIDEV YGLGPLNEYE RMGLEKAKKE LSVSIHKGVT FAKK

Arabidopsis Description

PMDH1Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q0WUS4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.