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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 3
  • cytosol 2
  • mitochondrion 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 cytosol: 22313117
extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_03s0088g01190.t01 Wine grape cytosol, mitochondrion, peroxisome, plastid 89.08 89.33
PGSC0003DMT400026930 Potato plastid 82.35 83.52
GSMUA_Achr4P01380_001 Banana plasma membrane 82.35 82.58
Os12t0632700-01 Rice extracellular, nucleus, plastid 81.51 81.74
Zm00001d041243_P001 Maize mitochondrion 80.67 80.0
TraesCS5A01G014300.1 Wheat nucleus, plastid 80.11 79.89
TraesCS5D01G019700.1 Wheat nucleus 80.11 79.89
TraesCS5B01G012400.1 Wheat cytosol 79.27 79.05
HORVU5Hr1G002010.1 Barley plastid 79.83 69.68
KXG24112 Sorghum plastid 80.95 64.8
PGSC0003DMT400032266 Potato cytosol, extracellular 61.06 63.01
PGSC0003DMT400039788 Potato mitochondrion 59.1 61.88
PGSC0003DMT400030247 Potato plastid 56.3 48.79
PGSC0003DMT400065411 Potato plastid 56.3 48.79
PGSC0003DMT400050235 Potato plastid 56.02 48.54
Protein Annotations
KEGG:00020+1.1.1.37KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37EntrezGene:102586271Gene3D:3.40.50.720Gene3D:3.90.110.10MapMan:5.7.3.6.5GO:GO:0003674
GO:GO:0003824GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005773GO:GO:0005777GO:GO:0005975GO:GO:0006091GO:GO:0006099GO:GO:0006629
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009507GO:GO:0009536GO:GO:0009719
GO:GO:0009735GO:GO:0009941GO:GO:0009987GO:GO:0016491GO:GO:0016616GO:GO:0019752
GO:GO:0030060GO:GO:0031998GO:GO:0048046GO:GO:0055114GO:GO:0080093InterPro:IPR015955
InterPro:L-lactate/malate_DHInterPro:Lactate/malate_DH_CInterPro:Lactate/malate_DH_NInterPro:Lactate_DH/Glyco_Ohase_4_CUniProt:M1A2B4InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sfPFAM:PF00056PFAM:PF02866EnsemblPlantsGene:PGSC0003DMG400005120PGSC:PGSC0003DMG400005120EnsemblPlants:PGSC0003DMT400013106
PIRSF:PIRSF000102PANTHER:PTHR11540PANTHER:PTHR11540:SF21SUPFAM:SSF51735SUPFAM:SSF56327TIGRFAMs:TIGR01772
UniParc:UPI000044080FRefSeq:XP_006367081.1::::
Description
Glyoxisomal malate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400005120]
Coordinates
chr1:-:83129013..83132862
Molecular Weight (calculated)
37634.0 Da
IEP (calculated)
8.054
GRAVY (calculated)
0.142
Length
357 amino acids
Sequence
(BLAST)
001: MQPSGAEVHQ RIARISAHLY PSNPQMGDGS ILERTNCRAK GGAAGFKVAI LGAAGGIGQP LAMLMKMNPL VSVLHLYDVV NAPGVTADIS HMDTGAVVRG
101: FLGQSELEGA LTGMDLVIIP AGIPRKPGMT RDDLFKINAG IVRTLCEGIA KCCPNAIVNL ISNPVNSTVP IAAEVFKKAG TYDPKKLLGV TSLDVVRANT
201: FVAEVLGLDP REVEVPVVGG HAGVTILPLL SQVKPPCSFT HEETEYLTKR IQDGGTEVVE AKKGAGSATL SMAYAAVKFA DVCLKGLRGD AGVVACAFVA
301: SQVTELPFFA SKVRLGRTGA EEVYQLGPLN EYERIGLEKA KKELAESIQK GISFIRN
Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)
001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK
Arabidopsis Description
PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.